Factsheet for VIT_00s1403g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053154	Potato	nucleus	62.33	64.07
Solyc04g054880.2.1	Tomato	nucleus	62.06	63.88
KRH43215	Soybean	nucleus	62.87	62.62
KRH59380	Soybean	nucleus	61.65	61.9
CDX69386	Canola	nucleus	48.1	58.77
KRG97595	Soybean	cytosol	52.57	58.7
CDY42005	Canola	nucleus	48.51	58.5
AT4G39790.1	Thale cress	plastid	51.76	58.14
GSMUA_Achr2P22150_001	Banana	cytosol	44.99	56.27
Bra011832.1-P	Field mustard	nucleus	49.32	52.98
Os05t0172300-01	Rice	nucleus	46.34	47.37
GSMUA_Achr11P...	Banana	cytosol	42.68	47.3
Os05t0255800-01	Rice	nucleus	30.22	47.25
EES08807	Sorghum	nucleus	45.94	47.15
TraesCS7D01G074000.2	Wheat	nucleus	45.12	45.31
HORVU7Hr1G018230.3	Barley	nucleus	45.26	45.26
TraesCS4A01G376900.1	Wheat	nucleus	45.12	45.24
Zm00001d048891_P002	Maize	nucleus	45.53	45.04
Os09t0368900-00	Rice	nucleus	35.64	38.34
HORVU5Hr1G058240.4	Barley	nucleus	35.09	36.53
TraesCS5D01G201000.1	Wheat	nucleus	34.82	36.15
TraesCS5A01G189900.1	Wheat	cytosol	34.69	36.01
VIT_06s0009g01610.t01	Wine grape	nucleus	18.56	35.96
TraesCS5B01G193300.1	Wheat	cytosol	34.82	35.64
VIT_06s0009g01600.t01	Wine grape	nucleus	21.14	33.12
VIT_07s0031g02650.t01	Wine grape	cytosol	15.18	31.73
VIT_03s0038g02660.t01	Wine grape	nucleus	26.56	30.11
VIT_00s0434g00010.t01	Wine grape	nucleus	26.83	27.81
VIT_00s0264g00010.t01	Wine grape	nucleus	26.83	27.31
VIT_11s0103g00310.t01	Wine grape	nucleus	26.15	25.16
VIT_09s0002g04590.t01	Wine grape	nucleus	20.05	24.18
VIT_10s0003g04480.t01	Wine grape	nucleus	20.6	23.31
VIT_04s0023g03760.t01	Wine grape	mitochondrion	19.51	22.97
VIT_18s0001g00170.t01	Wine grape	cytosol	22.76	22.64
VIT_03s0038g03260.t01	Wine grape	cytosol	24.25	22.04
VIT_04s0008g04200.t01	Wine grape	cytosol	20.87	21.78
VIT_18s0001g02480.t01	Wine grape	nucleus	22.49	21.28
VIT_15s0021g01550.t01	Wine grape	nucleus	21.68	18.93

Protein Annotations

EntrezGene:100245130	wikigene:100245130	MapMan:35.1	ProteinID:CCB57443	ProteinID:CCB57443.1	ncoils:Coil
InterPro:DUF630	InterPro:DUF632	UniProt:F6HRY4	EMBL:FN596079	EntrezGene:LOC100245130	wikigene:LOC100245130
PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450	PANTHER:PTHR21450:SF4	UniParc:UPI0002108875	ArrayExpress:VIT_00s1403g00010
EnsemblPlantsGene:VIT_00s1403g00010	EnsemblPlants:VIT_00s1403g00010.t01	unigene:Vvi.19336	unigene:Vvi.22023	RefSeq:XP_002269256	RefSeq:XP_002269256.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:39036169..39041494

Molecular Weight (calculated)

82828.0 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.723

Length

738 amino acids

Sequence
(BLAST)

001: MGCASSKTEK NEALRLCKER RRFVKQAIDS RYGLAAAHVS YTESLRNIGI ALRRFAEAEA LIESSLSMSA TELDKTPSQS SYPSPSPSHN AEVSDSPMHN
101: ESPLSPPVSR LSYMRSGATA AVTVSVNPPK NGYMDDESTS FSMPPPPPPP PEGASWDYFD PADDSEDFRF VGLDGINMNF DDLRAWKRVQ GKEVGLDGTD
201: ELHEISTRPG WEHKTPEGSD CNDQMEESNG HSINSGGTDG IRKTIDYEVK HQGANAKGSA ETMSRKHILD QSGSKRERAL VEKDVSAERE DPSEFITHRA
301: KDFLSSIKDI EHRFFRASES GKEVSRMLET NKIGMGYCDA KGRSSASRLF GAFQLVCCQE KSALVSHEPL QHGTKIITWN RSTSSRSSSS KNPLTTAATK
401: EDNDDSGSDF VEEFCMIAGS HSSTLERLYA WERKLYDEVK ASESIRKEYD RKCDKLRHQV AKDLSSQVID KTRAVVKDLH SRLRVAIHAV DSISKRIEKM
501: RDEELQPQLA ELIQGLIRMW KAMLECHHAQ YITISLAYHA RSSTGTPRGD PHRQIMAQLQ SEIEYFGLSF ADWINSHTSY VEALNGWLQN CILLPQERTK
601: SRRPFSPRRV LAPPIFVLCR DWLAGAKGLP ADELSDAIKQ FISDLHQLLR QTEEQQKKEK PFDSNTNGES ESKDDEKTED KSLNLGCIHT SLAKVLERLT
701: KFSEASLKMY EDVRQKSEAA RIAYSTGRPS RPEGYVIK

Best Arabidopsis Sequence Match ( AT4G39790.1 )
(BLAST)

001: MGHSILEKMG CSNSKASMNK KNEPLHLCKE RKRFVKQAMD SRCALAAAHV SYIRSLRNIG ACLRQYAEAE TAHESSPSLT ATEPEKSPSH NSSYPDDSVD
101: SPLSHNSNPN PNPKPLFNLS YMKTETASST VTFTINPLSD GDDDLEVTMP AFSPPPPPRP RRPETSSWDY FDTCDDFDSF RFVGLSEQTE IDSECDAAVI
201: GLEKITSQGN VAKSGSETLQ DSSFKTKQRK QSCEDNDERE DPSEFITHRA KDFVSSMKDI EHKFFRASES GREVSRMLEV NKIRVGFADM TGKGNSIAFL
301: AALKRACCRG KSYSPVSQEP LSHQVTKVIV WKRTSSSRSS TSRNPLIQTS KEDHDDESGS DFIEEFCMIS GSHSSSLDRL YAWERKLYDE VKASEMIRKE
401: YDRKCEQLRN QFAKDHSAKS MDKTRAAAKD LHSRIRVAIQ SVESISKRIE RIRDDELHPQ LLEFLQGLIR MWKAMLECHH TQYITISLAY HCRHSSKTAH
501: ESVLKRRILA ELLEETECFG LSFVDLVHSM ASYVEALNGW LHNCVLLPQE RSTRNRRPWS PRRVLAPPIF VLCRDWSAGI KTLPSDELSG SIKGFSLDME
601: MLGEEKGGSL LVSDLSSVHS SLAKLLERLK KFSEASLKMY EDVKVKSEAA RVAYTNK

Arabidopsis Description

BZIP transcription factor, putative (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q5XV54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.