Factsheet for VIT_15s0021g01550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01066	Soybean	nucleus	60.83	70.51
CDX83412	Canola	nucleus	56.09	70.43
CDX95620	Canola	nucleus	56.45	68.63
KRH40173	Soybean	nucleus	62.37	68.62
CDY42691	Canola	nucleus	57.87	67.63
CDY56992	Canola	nucleus	57.28	66.58
CDY41178	Canola	nucleus	56.8	66.57
AT1G02110.1	Thale cress	nucleus	55.38	66.57
CDX71821	Canola	nucleus	55.86	66.48
Bra007523.1-P	Field mustard	nucleus	56.69	66.25
AT3G60320.1	Thale cress	nucleus	62.13	65.95
Bra000365.1-P	Field mustard	nucleus	62.25	65.59
Bra014497.1-P	Field mustard	nucleus	58.11	64.44
PGSC0003DMT400066867	Potato	nucleus	64.73	64.2
KRH66512	Soybean	nucleus	58.34	61.7
Solyc01g090270.2.1	Tomato	nucleus	63.91	61.64
GSMUA_Achr11P...	Banana	nucleus	51.01	59.61
GSMUA_Achr8P10940_001	Banana	nucleus	49.47	56.79
GSMUA_Achr4P21640_001	Banana	nucleus	46.51	56.14
Os10t0562700-01	Rice	nucleus	50.89	56.06
TraesCS1B01G231600.1	Wheat	nucleus	49.47	54.36
TraesCS1D01G219800.1	Wheat	nucleus	49.59	54.34
TraesCS1A01G218200.1	Wheat	nucleus	49.23	54.1
Zm00001d029946_P003	Maize	nucleus	49.7	53.92
EER94480	Sorghum	nucleus	49.7	53.5
Zm00001d000039_P001	Maize	nucleus	48.76	52.75
Zm00001d017461_P001	Maize	cytosol, plastid	26.04	40.07
TraesCS6D01G225400.1	Wheat	cytosol, mitochondrion	26.51	39.86
TraesCS6A01G243100.1	Wheat	mitochondrion	26.63	39.75
VIT_04s0023g03760.t01	Wine grape	mitochondrion	29.47	39.71
TraesCS6B01G281100.1	Wheat	mitochondrion, plastid	26.75	39.65
HORVU6Hr1G062350.2	Barley	plastid	26.75	39.58
KXG31098	Sorghum	cytosol, plastid	26.75	39.03
Os02t0654600-00	Rice	nucleus	27.57	39.03
Zm00001d051338_P002	Maize	nucleus	25.09	38.69
VIT_10s0003g04480.t01	Wine grape	nucleus	26.98	34.97
VIT_09s0002g04590.t01	Wine grape	nucleus	20.47	28.27
VIT_07s0031g02650.t01	Wine grape	cytosol	10.41	24.93
VIT_03s0038g02660.t01	Wine grape	nucleus	18.7	24.27
VIT_04s0008g04200.t01	Wine grape	cytosol	19.53	23.34
VIT_00s0434g00010.t01	Wine grape	nucleus	18.93	22.47
VIT_00s0264g00010.t01	Wine grape	nucleus	18.93	22.07
VIT_06s0009g01610.t01	Wine grape	nucleus	9.94	22.05
VIT_00s1403g00010.t01	Wine grape	nucleus	18.93	21.68
VIT_03s0038g03260.t01	Wine grape	cytosol	19.17	19.95
VIT_18s0001g00170.t01	Wine grape	cytosol	17.28	19.68
VIT_11s0103g00310.t01	Wine grape	nucleus	17.75	19.56
VIT_18s0001g02480.t01	Wine grape	nucleus	17.4	18.85
VIT_06s0009g01600.t01	Wine grape	nucleus	10.06	18.05

Protein Annotations

EntrezGene:100266818	wikigene:100266818	MapMan:35.1	ProteinID:CCB43889	ProteinID:CCB43889.1	ncoils:Coil
InterPro:DUF630	InterPro:DUF632	UniProt:F6GVA6	EMBL:FN594952	EntrezGene:LOC100266818	wikigene:LOC100266818
PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450	PANTHER:PTHR21450:SF9	TIGR:TC62680	UniParc:UPI000210A015
ArrayExpress:VIT_15s0021g01550	EnsemblPlantsGene:VIT_15s0021g01550	EnsemblPlants:VIT_15s0021g01550.t01	RefSeq:XP_002273471	RefSeq:XP_002273471.2	SEG:seg

Description

No Description!

Coordinates

chr15:-:12144524..12151040

Molecular Weight (calculated)

94761.4 Da

IEP (calculated)

7.124

GRAVY (calculated)

-0.740

Length

845 amino acids

Sequence
(BLAST)

001: MGCTASKLDN EDAVRRCKER RRLMKEAVYA RHHLAAAHAD YCRSLRITGS ALSEFAAGEP LSVSDQTPAV LLRNPSSVSN YSYQPPPRVP SQAQSLRPPP
101: PPPAFSPSPS PTIASSKLPH ILSASSLNSS RPRRPPKLPH ILSESSLASS PVSQRSDGKY HIPTAYQAHS TYSSTPSQTS SVWNWENFYP PSPPDSEFFR
201: RHTDNDKHSE PPDSEFFRPH TDDDKHSEPP ESEFFRRHTN NVKHSEPPDS EFFRRPTNGD KHSEPPESEF FRRHTNDVKH SEPPDSEFFR RPTNGDKHSE
301: RLHQHQHHHL DDDGEETERE EVQCSEWGDH YSTTSSSDEG DVESRSEIGN RSNFGSSVHN EPTTVKSKFP PASKSNKFDD AGSSVSYSAG TGEISDLKIV
401: VRHRDLSEIV ASLKEYFDQA ASAGERVSEM LEIGRAQLDR SFRQLKKTVY HSSGVLSNLS STWTSKPPLA VKYQLDAGSL HEPGGPKSLS STLDRLFAWE
501: KKLYEEVKAR EGVKIAHEKK LSTLQSQEYK GDDEIKLDKT KAAIKRLQSL IIVTSQAVST TSTAINELKD TDLVPQLVEL CHGLMYMWQS MNQFHEVQNH
601: IVQQVRGLVN RVGKGESTSE LHRQATRDLE SAVSAWHSSF CRLIKYQRDF ILSLQGWLRL TLIPLNNDNI NGHREQSVVF AFIDEWKLAL DRLPDTVASE
701: AIKSFVHVVH AISGKQAEEL KIKKRTETAS KELEKKASSL RNIEKKFYHS YSMVGIGLPD SGPDNGQGLD ARDPLSEKKA ELAACQRRVE DEMVRHSKAV
801: EVTRALTLNN IQTGLPGVFQ AMTSFSGLFM EALTLVCEKS YAIAA

Best Arabidopsis Sequence Match ( AT1G02110.1 )
(BLAST)

001: MGCTASKLDS EDAVRRCKER RRLMKDAVYA RHHLAAAHSD YCRSLRLTGS ALSSFAAGEP LSVSENTPAV FLRPSSSQDA PRVPSSHSPE PPPPPIRSKP
101: KPTRPRRLPH ILSDSSPSSS PATSFYPTAH QNSTYSRSPS QASSVWNWEN FYPPSPPDSE YFERKARQNH KHRPPSDYDA ETERSDHDYC HSRRDAAEEV
201: HCSEWGDDHD RFTATSSSDG DGEVETHVSR SGIEEEPVKQ PHQDPNGKEH SDHVTTSSDC YKTKLVVRHK NLKEILDAVQ DYFDKAASAG DQVSAMLEIG
301: RAELDRSFSK LRKTVYHSSS VFSNLSASWT SKPPLAVKYK LDASTLNDEQ GGLKSLCSTL DRLLAWEKKL YEDVKAREGV KIEHEKKLSA LQSQEYKGGD
401: ESKLDKTKTS ITRLQSLIIV SSEAVLTTSN AILRLRDTDL VPQLVELCHG LMYMWKSMHE YHEIQNNIVQ QVRGLINQTE RGESTSEVHR QVTRDLESAV
501: SLWHSSFCRI IKFQREFICS LHAWFKLSLV PLSNGDPKKQ RPDSFALCEE WKQSLERVPD TVASEAIKSF VNVVHVISIK QAEEVKMKKR TESAGKELEK
601: KASSLRSIER KYYQAYSTVG IGPGPEVLDS RDPLSEKKCE LAACQRQVED EVMRHVKAVE VTRAMTLNNL QTGLPNVFQA LTSFSSLFTE SLQTVCSRSY
701: SIN

Arabidopsis Description

BZIP domain class transcription factor (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q56W45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.