Factsheet for VIT_03s0038g03260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043330	Potato	mitochondrion	56.65	57.0
Solyc10g074470.1.1	Tomato	cytosol	55.91	56.54
KRH14028	Soybean	cytosol	50.62	56.07
KRH74089	Soybean	cytosol	53.33	55.3
Solyc01g112050.2.1	Tomato	nucleus	60.34	55.06
PGSC0003DMT400048013	Potato	nucleus	60.84	54.11
CDY17530	Canola	cytosol	46.92	53.66
CDX76322	Canola	cytosol	46.67	53.61
CDX69122	Canola	nucleus	49.51	53.53
AT2G17110.1	Thale cress	nucleus	47.54	52.66
Bra020807.1-P	Field mustard	nucleus	49.14	52.29
CDX75484	Canola	cytosol, plastid	44.83	52.22
CDX88008	Canola	nucleus	45.94	52.17
Bra009665.1-P	Field mustard	cytosol	44.95	51.63
CDY07877	Canola	cytosol	44.46	50.49
Bra011597.1-P	Field mustard	nucleus	51.85	50.36
AT4G35240.1	Thale cress	nucleus	52.09	48.9
GSMUA_Achr3P14690_001	Banana	nucleus	39.16	45.17
GSMUA_Achr1P18120_001	Banana	cytosol	37.44	44.71
Os02t0669900-01	Rice	cytosol	23.4	44.5
GSMUA_Achr11P...	Banana	mitochondrion	35.71	43.15
VIT_18s0001g00170.t01	Wine grape	cytosol	38.3	41.91
GSMUA_Achr7P04020_001	Banana	cytosol	35.84	41.57
HORVU2Hr1G096140.2	Barley	cytosol	18.84	40.91
VIT_07s0031g02650.t01	Wine grape	cytosol	17.73	40.79
Os04t0562800-00	Rice	cytosol, mitochondrion	26.6	39.42
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	31.4	38.7
Os09t0547300-01	Rice	nucleus	41.63	36.78
EER97130	Sorghum	nucleus	40.89	36.36
Zm00001d017553_P001	Maize	cytosol	33.37	35.99
Os08t0551200-00	Rice	cytosol	35.84	35.93
Zm00001d006286_P001	Maize	nucleus	40.27	35.78
OQU85656	Sorghum	cytosol	33.74	35.77
HORVU7Hr1G057760.4	Barley	cytosol	28.82	35.73
TraesCS7D01G273600.1	Wheat	cytosol	35.1	35.19
Zm00001d021452_P001	Maize	nucleus	40.64	35.07
KXG26898	Sorghum	cytosol	34.11	34.93
HORVU2Hr1G096180.1	Barley	cytosol	26.23	34.8
HORVU6Hr1G064670.13	Barley	nucleus	32.39	34.61
TraesCS7B01G171500.1	Wheat	cytosol	33.99	34.59
TraesCS6B01G271800.1	Wheat	nucleus	32.39	34.51
TraesCS5B01G348100.1	Wheat	nucleus	40.76	34.48
TraesCS6D01G235200.1	Wheat	nucleus	32.39	34.47
TraesCS6A01G253600.1	Wheat	nucleus	32.27	34.34
TraesCS5D01G353500.1	Wheat	nucleus	40.76	34.34
TraesCS2B01G423500.1	Wheat	cytosol	32.39	34.33
TraesCS5A01G347200.1	Wheat	nucleus	40.52	34.31
Zm00001d002669_P002	Maize	cytosol	33.25	34.22
TraesCS2D01G402400.1	Wheat	cytosol	31.9	34.12
Zm00001d026130_P001	Maize	nucleus	33.0	33.97
TraesCS2A01G405700.1	Wheat	cytosol	31.77	33.9
VIT_18s0001g02480.t01	Wine grape	nucleus	32.51	33.85
HORVU5Hr1G086500.2	Barley	nucleus	40.02	33.57
TraesCS7A01G273600.1	Wheat	cytosol, mitochondrion, nucleus	34.73	30.06
VIT_11s0103g00310.t01	Wine grape	nucleus	25.12	26.6
VIT_03s0038g02660.t01	Wine grape	nucleus	21.31	26.57
VIT_00s0434g00010.t01	Wine grape	nucleus	23.03	26.26
VIT_00s0264g00010.t01	Wine grape	nucleus	23.03	25.79
VIT_06s0009g01610.t01	Wine grape	nucleus	11.7	24.93
VIT_00s1403g00010.t01	Wine grape	nucleus	22.04	24.25
VIT_09s0002g04590.t01	Wine grape	nucleus	17.86	23.69
VIT_04s0023g03760.t01	Wine grape	mitochondrion	17.12	22.17
VIT_10s0003g04480.t01	Wine grape	nucleus	17.49	21.78
VIT_06s0009g01600.t01	Wine grape	nucleus	12.07	20.81
VIT_04s0008g04200.t01	Wine grape	cytosol	17.36	19.94
VIT_15s0021g01550.t01	Wine grape	nucleus	19.95	19.17

Protein Annotations

EntrezGene:100264167	wikigene:100264167	MapMan:35.1	ProteinID:CCB60572	ProteinID:CCB60572.1	ncoils:Coil
InterPro:DUF630	InterPro:DUF632	UniProt:F6I0V6	EMBL:FN596508	EntrezGene:LOC100264167	wikigene:LOC100264167
PFAM:PF04782	PFAM:PF04783	PANTHER:PTHR21450	PANTHER:PTHR21450:SF2	TIGR:TC52307	TIGR:TC66969
UniParc:UPI00015C88A2	ArrayExpress:VIT_03s0038g03260	EnsemblPlantsGene:VIT_03s0038g03260	EnsemblPlants:VIT_03s0038g03260.t01	unigene:Vvi.9980	RefSeq:XP_002278825
RefSeq:XP_002278825.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:2403446..2410002

Molecular Weight (calculated)

91328.3 Da

IEP (calculated)

6.203

GRAVY (calculated)

-0.694

Length

812 amino acids

Sequence
(BLAST)

001: MGCTTSKIDD LPAVALCRER CACLDDAIQQ RYTFAAYHVA YMKSLQVIGG SLQEFFDLDL DGSAVSPVLP LPVQKKGDHE VQREIKLKAE PSGLSPAAAA
101: LNDRSNSNSG SHLNFHSDSD DEDGSMESLH HSEHYSPRHG YQDHLGYDEE ALSSFPRGFM NVNMNFMKNQ ATQSVTYQHR PASPEKMHMG EASYYPYAYP
201: NNNPSSYPYG YGGGNYGYYG QQPQQPYGAS SPAMATGASS SKPPPPPPSP PSSSAWDFFN PFESYDKYYP PYTPSRDSKD LREEEGIPDL EDEDYLHEVV
301: KEIHGNQKFV DGGGGGGNYA KMMENQSEKV DNMDAHYQRQ SVSADNDRVE YEVHMLEKKV VDSEEKAGDR GNVAAFKARG GPRGMYEVVR EIQVQFVRAS
401: ECGNELAKML EVGKHPYHPK NQVSSKMLHA ISPSVAALVS SQPATSKNAE SSASGEKADP MELEFDGGAG MRSGNLSSTL QKLHLWEKKL YDEVKVEEKM
501: RVAHERKSRK LKRLDERGAE AHKVDSTRSM IRSLSTKIRI AIQVVEKISL KINKLRDDEL WPQLNELIQG LTRMWKSMLE CHRSQCQAIR EARNLDVISS
601: HKLSDAHLDA TLRLERDLLH WTSMFSSWIA AQKGYVRALN NWLVKCLLYE PEETADGIAP FSPGRVGAPP AFVICNQWSQ AMDRISEKEV VDSIRVFAKS
701: IFQLWERGRL EMRQRALVDK DLERKVKDLD REDQKIQKEI QALDKKMVPI AGHSDGLALA GHLVYQSETS SNNSIHANLQ HIFESMERFT ANSLRAYEEL
801: LQRIEEDKLA EA

Best Arabidopsis Sequence Match ( AT4G35240.3 )
(BLAST)

001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEE

Arabidopsis Description

Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.