Factsheet for PGSC0003DMT400043330

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074470.1.1	Tomato	cytosol	95.17	95.64
PGSC0003DMT400048013	Potato	nucleus	74.47	65.83
VIT_03s0038g03260.t01	Wine grape	cytosol	57.0	56.65
KRH14028	Soybean	cytosol	51.42	56.62
KRH74089	Soybean	cytosol	54.03	55.68
CDY17530	Canola	cytosol	47.83	54.37
CDX76322	Canola	cytosol	46.47	53.04
CDX75484	Canola	cytosol, plastid	45.35	52.51
AT2G17110.1	Thale cress	nucleus	47.34	52.11
CDX88008	Canola	nucleus	46.1	52.03
Bra009665.1-P	Field mustard	cytosol	45.23	51.63
CDX69122	Canola	nucleus	47.96	51.53
CDY07877	Canola	cytosol	45.48	51.33
Bra020807.1-P	Field mustard	nucleus	47.83	50.59
Bra011597.1-P	Field mustard	nucleus	51.55	49.76
AT4G35240.1	Thale cress	nucleus	51.8	48.32
GSMUA_Achr3P14690_001	Banana	nucleus	39.28	45.03
Os02t0669900-01	Rice	cytosol	23.67	44.73
GSMUA_Achr1P18120_001	Banana	cytosol	37.17	44.12
GSMUA_Achr11P...	Banana	mitochondrion	35.56	42.71
HORVU2Hr1G096140.2	Barley	cytosol	18.22	39.3
GSMUA_Achr7P04020_001	Banana	cytosol	33.95	39.14
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	31.1	38.09
Os04t0562800-00	Rice	cytosol, mitochondrion	25.77	37.96
PGSC0003DMT400045246	Potato	mitochondrion	12.27	37.93
OQU85656	Sorghum	cytosol	35.94	37.86
HORVU7Hr1G057760.4	Barley	cytosol	30.36	37.4
Zm00001d017553_P001	Maize	cytosol	34.57	37.05
Os09t0547300-01	Rice	nucleus	42.13	37.0
EER97130	Sorghum	nucleus	41.64	36.8
Zm00001d006286_P001	Maize	nucleus	41.51	36.65
HORVU6Hr1G064670.13	Barley	nucleus	34.2	36.32
TraesCS6B01G271800.1	Wheat	nucleus	34.2	36.22
TraesCS6A01G253600.1	Wheat	nucleus	33.83	35.78
TraesCS6D01G235200.1	Wheat	nucleus	33.83	35.78
Zm00001d021452_P001	Maize	nucleus	41.64	35.71
Os08t0551200-00	Rice	cytosol	35.81	35.68
TraesCS7D01G273600.1	Wheat	cytosol	35.81	35.68
TraesCS5B01G348100.1	Wheat	nucleus	42.26	35.52
TraesCS5A01G347200.1	Wheat	nucleus	41.76	35.14
TraesCS5D01G353500.1	Wheat	nucleus	41.88	35.06
HORVU5Hr1G086500.2	Barley	nucleus	41.76	34.81
TraesCS7B01G171500.1	Wheat	cytosol	34.08	34.46
KXG26898	Sorghum	cytosol	33.71	34.3
Zm00001d002669_P002	Maize	cytosol	32.59	33.33
Zm00001d026130_P001	Maize	nucleus	32.59	33.33
TraesCS2D01G402400.1	Wheat	cytosol	31.1	33.07
TraesCS2B01G423500.1	Wheat	cytosol	31.35	33.03
TraesCS2A01G405700.1	Wheat	cytosol	30.98	32.85
HORVU2Hr1G096180.1	Barley	cytosol	24.78	32.68
TraesCS7A01G273600.1	Wheat	cytosol, mitochondrion, nucleus	35.44	30.49
PGSC0003DMT400046483	Potato	cytosol	23.67	25.95
PGSC0003DMT400053154	Potato	nucleus	22.92	25.77
PGSC0003DMT400015690	Potato	nucleus	24.16	25.52
PGSC0003DMT400009224	Potato	nucleus	11.52	23.54
PGSC0003DMT400005111	Potato	nucleus	21.07	22.11
PGSC0003DMT400037619	Potato	plastid	15.37	19.2
PGSC0003DMT400066867	Potato	nucleus	19.21	18.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400043330	EnsemblPlantsGene:PGSC0003DMG400016824	EntrezGene:102602700	InterPro:DUF630	InterPro:DUF632	ncoils:Coil
PANTHER:PTHR21450	PANTHER:PTHR21450:SF2	PFAM:PF04782	PFAM:PF04783	PGSC:PGSC0003DMG400016824	RefSeq:XP_006365304.1
SEG:seg	UniParc:UPI0002952400	UniProt:M1BEG4	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016824]

Coordinates

chr10:-:48020446..48025776

Molecular Weight (calculated)

90854.6 Da

IEP (calculated)

5.749

GRAVY (calculated)

-0.582

Length

807 amino acids

Sequence
(BLAST)

001: MGCTSSKIDD LPAVALCRER CSFLDEAIHY RYALAEAHLA YLHSLKTVGL SVHHFFKENV ETSHSPVFIK SDPPPPEPPK KLIPPSSAPA PAPVDSHSSS
101: GSHLHFHSDS DSDEGSGTDS LHHHHLDGTS VPFHQYGQFS YGDHEMLGFG GSYPVGGNGG GFMHMNFMRN QTTPSVTYEQ RPVSTETVQM SEPSSSSSYY
201: PYPYATNYPD YANYGGGFYP SSTPAAGMSL APSSSKPPPP PPSPPRSSPW EFLNLFKTLE SYPVYPPSRD SREVREEEGI PDLEDVDFEH EAVKEVHEDQ
301: RFVDEAGTAS GSYSKAVEEN EKAADSESIH HQSSTSSSME DDPIEYEVHV VDKKVVDDEN RGNVAGSKGR SFNSDSDVVK EIQVQFERAS ESGNELAKML
401: EVGKLPHNRK HATYQGIVSS KMLHAITPSS SVLSLPSTLK NDAIEIADHA ILDVEGDISS RPSNISSTLQ KLYLWEKKLF EEVKAEEKIR VLHERKSRKL
501: KQLTEKGADS DKIDMTRKLV MSLSSKIRIA IQVVDKVSEK INKLRDEELW PQLNELIQGL CRMWRSMLEC HRFQCVAIGE AKRLDTIASH KHFSDAHLEA
601: TLQLEHELLN WTLSFSCWVT AQKGYVRALN SWLMKCLLYV PEETDDGIVP FSPGRIGAPP IFVICNHWSQ AFERVSEKEV VDCMRDFATN VLQLWERDKL
701: ELRQKMMVNK DMERQVKNLD REDQKIQKGI HALDKRIVLV SGEENSLSLN RHVVYQSETS KNSSFQVGLQ RIFEAMERFT ANSLKVYEEL LQRIEEDRLA
801: REPEAVS

Best Arabidopsis Sequence Match ( AT4G35240.3 )
(BLAST)

001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEE

Arabidopsis Description

Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.