Factsheet for Os04t0562800-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G096140.2	Barley	cytosol	48.36	70.86
Os02t0669900-01	Rice	cytosol	50.37	64.64
HORVU2Hr1G096180.1	Barley	cytosol	67.15	60.13
TraesCS2A01G405700.1	Wheat	cytosol	68.43	49.28
TraesCS2B01G423500.1	Wheat	cytosol	68.8	49.22
TraesCS2D01G402400.1	Wheat	cytosol	68.07	49.14
KXG26898	Sorghum	cytosol	68.43	47.29
Zm00001d002669_P002	Maize	cytosol	67.34	46.77
Zm00001d026130_P001	Maize	nucleus	66.24	46.01
GSMUA_Achr11P...	Banana	mitochondrion	41.61	33.93
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	38.69	32.17
CDX75484	Canola	cytosol, plastid	39.6	31.13
CDX76322	Canola	cytosol	39.23	30.41
CDY17530	Canola	cytosol	38.32	29.58
Bra020807.1-P	Field mustard	nucleus	39.23	28.18
CDX88008	Canola	nucleus	36.68	28.11
AT2G17110.1	Thale cress	nucleus	37.59	28.1
Bra009665.1-P	Field mustard	cytosol	36.13	28.01
CDY07877	Canola	cytosol	36.13	27.69
CDX69122	Canola	nucleus	37.77	27.56
VIT_03s0038g03260.t01	Wine grape	cytosol	39.42	26.6
Bra011597.1-P	Field mustard	nucleus	39.78	26.08
Solyc10g074470.1.1	Tomato	cytosol	38.14	26.03
PGSC0003DMT400043330	Potato	mitochondrion	37.96	25.77
KRH74089	Soybean	cytosol	36.13	25.29
AT4G35240.1	Thale cress	nucleus	39.78	25.2
Solyc01g112050.2.1	Tomato	nucleus	40.69	25.06
KRH14028	Soybean	cytosol	33.39	24.97
PGSC0003DMT400048013	Potato	nucleus	40.88	24.53
Os08t0551200-00	Rice	cytosol	35.58	24.07
VIT_18s0001g00170.t01	Wine grape	cytosol	31.75	23.45
KRH51633	Soybean	cytosol	28.1	23.19
KRH60958	Soybean	cytosol	27.19	22.51
Os09t0547300-01	Rice	nucleus	36.86	21.98
Os09t0542500-00	Rice	cytosol	21.9	21.9
Os01t0960200-00	Rice	nucleus	10.58	21.64
AT1G20530.1	Thale cress	cytosol	23.36	20.85
CDY31475	Canola	nucleus	22.81	20.76
Os02t0175200-00	Rice	cytosol, mitochondrion	11.31	19.68
Os05t0425000-00	Rice	nucleus	31.2	19.32
Os09t0538700-01	Rice	nucleus	19.89	16.69
Os05t0172300-01	Rice	nucleus	20.62	15.65
Os07t0686500-01	Rice	endoplasmic reticulum	18.8	14.43
Os10t0562700-01	Rice	nucleus	20.07	14.34
Os01t0585600-01	Rice	nucleus	17.7	14.16
Os02t0654600-00	Rice	nucleus	15.33	14.07
Os09t0368900-00	Rice	nucleus	16.06	12.83
Os05t0394200-01	Rice	nucleus	15.51	12.82
Os03t0321500-01	Rice	plasma membrane	19.34	12.57
Os07t0211900-01	Rice	plasma membrane	15.69	11.67
Os01t0500500-01	Rice	nucleus, plasma membrane	16.61	11.42
Bra025823.1-P	Field mustard	peroxisome	22.99	10.98
CDY29526	Canola	peroxisome	22.99	10.97
Os05t0255800-01	Rice	nucleus	9.31	10.81
Os02t0175301-00	Rice	nucleus	7.3	10.67

Protein Annotations

EnsemblPlants:Os04t0562800-00	EnsemblPlantsGene:Os04g0562800	InterPro:DUF632	ncoils:Coil	PANTHER:PTHR21450	PANTHER:PTHR21450:SF20
PFAM:PF04782	ProteinID:BAS90490.1	SEG:seg	UniParc:UPI000393C115	UniProt:A0A0P0WDH5	MapMan:35.1

Description

Similar to H0211B05.8 protein. (Os04t0562800-00)

Coordinates

chr4:+:28171210..28174275

Molecular Weight (calculated)

61492.3 Da

IEP (calculated)

7.943

GRAVY (calculated)

-0.398

Length

548 amino acids

Sequence
(BLAST)

001: MAAPAPPRSP PRESSWAFLN VFANYEPYDN YYYDSTAAAA SAAAYTPSRS SREVREEEGI PELEEDEDDC VFKEVASGGY SAGSGGHRSR RSSIGSLSSV
101: AEQENAVIDN DVVASTSEIY RRPLAHRNVA MRALAQAAQR VAGNGGNVDV AGEIKAQLVR AAEATRELAP LLEVGKPSYQ EHSHASSRLM SSIPVPNLGC
201: KGVDLVDIRG GGVMVDSKSL SLTLEKLYFW ERKLYGEVKA EEKMRLLLAK NSKRLKLLDQ RGAEAHKIDA TRNLLRKLST KIKIAVRVIA KVSTKINKVR
301: DEELGPQVNA LIQGFIKMWQ YKLHSYHTQF QVISEAKNLV SVVSRENGPD LAMELELELI KWIINFSSWV NAHRNFVRAL NGWLALCLNY ETGETTYGEP
401: PYSPGRIGAP LVFIICNRWS QAMDQISEKD VVNAMKALVS SVQHLWEQQN QEEGEERILA IRERERWMKM LEKKTLEVKR EADELNKKLA LVLRRQSLHQ
501: RPTMQTYEAH CVEASSVHIN LRLVLQALEN FAANSLQAFQ EILRQSDS

Best Arabidopsis Sequence Match ( AT4G35240.3 )
(BLAST)

001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEE

Arabidopsis Description

Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.