Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75484 | Canola | cytosol, plastid | 79.36 | 85.51 |
| CDX76322 | Canola | cytosol | 75.37 | 80.06 |
| CDY17530 | Canola | cytosol | 74.17 | 78.45 |
| AT4G35240.1 | Thale cress | nucleus | 85.49 | 74.22 |
| CDX88008 | Canola | nucleus | 60.05 | 63.08 |
| CDY07877 | Canola | cytosol | 58.99 | 61.96 |
| KRH14028 | Soybean | cytosol | 52.2 | 53.48 |
| KRH74089 | Soybean | cytosol | 54.73 | 52.49 |
| VIT_03s0038g03260.t01 | Wine grape | cytosol | 53.53 | 49.51 |
| Solyc10g074470.1.1 | Tomato | cytosol | 51.66 | 48.32 |
| PGSC0003DMT400043330 | Potato | mitochondrion | 51.53 | 47.96 |
| Solyc01g112050.2.1 | Tomato | nucleus | 53.0 | 44.72 |
| PGSC0003DMT400048013 | Potato | nucleus | 53.4 | 43.92 |
| Os02t0669900-01 | Rice | cytosol | 24.5 | 43.09 |
| HORVU2Hr1G096140.2 | Barley | cytosol | 20.11 | 40.37 |
| GSMUA_Achr1P18120_001 | Banana | cytosol | 35.15 | 38.82 |
| GSMUA_Achr7P04020_001 | Banana | cytosol | 35.69 | 38.29 |
| GSMUA_Achr3P14690_001 | Banana | nucleus | 35.69 | 38.07 |
| Os04t0562800-00 | Rice | cytosol, mitochondrion | 27.56 | 37.77 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.09 | 35.86 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, nucleus | 30.89 | 35.2 |
| HORVU7Hr1G057760.4 | Barley | cytosol | 30.63 | 35.11 |
| OQU85656 | Sorghum | cytosol | 35.42 | 34.73 |
| Zm00001d017553_P001 | Maize | cytosol | 34.62 | 34.53 |
| Os08t0551200-00 | Rice | cytosol | 36.09 | 33.46 |
| HORVU6Hr1G064670.13 | Barley | nucleus | 33.82 | 33.42 |
| TraesCS6D01G235200.1 | Wheat | nucleus | 33.95 | 33.42 |
| Os09t0547300-01 | Rice | nucleus | 40.88 | 33.41 |
| TraesCS6B01G271800.1 | Wheat | nucleus | 33.69 | 33.2 |
| EER97130 | Sorghum | nucleus | 40.35 | 33.19 |
| HORVU2Hr1G096180.1 | Barley | cytosol | 27.03 | 33.17 |
| TraesCS6A01G253600.1 | Wheat | nucleus | 33.56 | 33.03 |
| TraesCS7D01G273600.1 | Wheat | cytosol | 35.55 | 32.96 |
| Zm00001d006286_P001 | Maize | nucleus | 39.81 | 32.71 |
| TraesCS7B01G171500.1 | Wheat | cytosol | 34.62 | 32.58 |
| TraesCS2D01G402400.1 | Wheat | cytosol | 32.76 | 32.41 |
| Zm00001d021452_P001 | Maize | nucleus | 40.21 | 32.09 |
| TraesCS2A01G405700.1 | Wheat | cytosol | 32.49 | 32.06 |
| TraesCS2B01G423500.1 | Wheat | cytosol | 32.22 | 31.59 |
| Zm00001d002669_P002 | Maize | cytosol | 33.02 | 31.43 |
| KXG26898 | Sorghum | cytosol | 33.16 | 31.4 |
| CDY31475 | Canola | nucleus | 25.17 | 31.4 |
| TraesCS5B01G348100.1 | Wheat | nucleus | 39.68 | 31.04 |
| TraesCS5A01G347200.1 | Wheat | nucleus | 39.55 | 30.97 |
| Zm00001d026130_P001 | Maize | nucleus | 32.49 | 30.93 |
| TraesCS5D01G353500.1 | Wheat | nucleus | 39.68 | 30.91 |
| HORVU5Hr1G086500.2 | Barley | nucleus | 39.55 | 30.68 |
| CDX88372 | Canola | nucleus | 32.36 | 29.42 |
| CDY41788 | Canola | nucleus | 33.29 | 29.34 |
| CDY04672 | Canola | nucleus | 33.29 | 28.67 |
| CDY08177 | Canola | nucleus | 33.56 | 28.28 |
| TraesCS7A01G273600.1 | Wheat | cytosol, mitochondrion, nucleus | 35.02 | 28.04 |
| CDY28162 | Canola | cytosol | 14.11 | 26.24 |
| CDY28161 | Canola | nucleus | 7.06 | 25.85 |
| CDX69386 | Canola | nucleus | 20.37 | 25.33 |
| CDY42005 | Canola | nucleus | 20.64 | 25.33 |
| CDY66508 | Canola | cytosol, nucleus | 14.11 | 25.06 |
| CDX77992 | Canola | nucleus | 20.91 | 24.96 |
| CDX73734 | Canola | nucleus | 21.04 | 24.69 |
| CDX68628 | Canola | nucleus | 21.44 | 23.82 |
| CDY42454 | Canola | cytosol | 21.84 | 23.4 |
| CDY18335 | Canola | cytosol | 21.97 | 23.34 |
| CDX87516 | Canola | nucleus | 13.85 | 23.11 |
| CDY39136 | Canola | nucleus | 22.5 | 22.44 |
| CDX82615 | Canola | nucleus | 22.5 | 22.41 |
| CDX83412 | Canola | nucleus | 19.71 | 21.99 |
| CDY04477 | Canola | nucleus | 20.91 | 21.84 |
| CDX87081 | Canola | nucleus | 15.45 | 21.72 |
| CDX71474 | Canola | nucleus | 20.37 | 21.28 |
| CDX95620 | Canola | nucleus | 19.31 | 20.86 |
| CDY56992 | Canola | nucleus | 19.71 | 20.36 |
| CDY42691 | Canola | nucleus | 19.44 | 20.19 |
| CDY41178 | Canola | nucleus | 19.17 | 19.97 |
| CDX71821 | Canola | nucleus | 18.64 | 19.72 |
| CDX84637 | Canola | cytosol | 17.18 | 19.23 |
| CDX79570 | Canola | cytosol | 16.78 | 18.29 |
| CDX80528 | Canola | nucleus | 17.84 | 18.28 |
| CDX88193 | Canola | nucleus | 17.58 | 17.91 |
| CDY52975 | Canola | nucleus | 16.78 | 16.87 |
| CDY29526 | Canola | peroxisome | 25.3 | 16.54 |
| CDY61085 | Canola | nucleus | 16.38 | 16.49 |
Protein Annotations
| EnsemblPlants:CDX69122 | EnsemblPlantsGene:GSBRNA2T00130908001 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF2 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:CDX69122 | ProteinID:CDX69122.1 | SEG:seg |
| UniParc:UPI0004EE3BE2 | MapMan:35.1 | : | : | : | : |
Description
BnaC01g03310D
Coordinates
chrLK031789:-:3036789..3040123
Molecular Weight (calculated)
82464.9 Da
IEP (calculated)
7.145
GRAVY (calculated)
-0.695
Length
751 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCTSSKLDD LPAVALCRER CSFLEAAIHQ RYLLSESHVA YTNSLRGIGH SLHLFINHHH RFIASGGANG EGGASPRLNL PPHRKGDPDE EEKSPKKAKL
101: PSGSGSDSGG SYMHMNYMKN KSMPPSVIYE QRPSSPQRVY EGESSSSSYN PYPPNYYGYS NTGPGPGYYG SSSSSSGASS KPPPPPPSPP RSNGWDFLNP
201: FDTYYPPYTP SRDSRELREE EVHGRPKFAG GGGGGGGGNN QPPPAAVYRE EPPLTSPSPP PVVDKSGAST SGGGDAAMYQ SRPSVSVEKK GVEYEVHVVE
301: KKTVVEDAGN EERRSNAAAP RGGGGGPRAV HEVTKEIETQ FVKAAESGSE IAKLLEVGKH PYGRKHVSKL LHPSLPSTSG GGSSAPAAAA AVTAPPTYAD
401: IEEELASRSR NLSSTLHKLH LWEKKLYHEV KAEEKLRVAH EKKLRKLKRL DERGAEATKV DTTRKLVRDM STKIRIAIQV VDKISVTINK IRDEDLWPQL
501: NALIQGLTRM WKAMLECHQT QSQAIREARG LGPIRASKKL GEEHLEATSL LGHELINWIL GFSSWVSAQK GYVRELNKWL MKCLLYEPEE TPDGIAPFSP
601: GRIGAPPIFV ICNQWSQALD RISEKEVIEA MRSFTTSVLQ LWEQDRLETT AMGQGDAEKR VRNMDREEQR IHREIQALEK KMVLVAPGDG LSLSGNAVYQ
701: SDTSNDSLQG SLQRIFEAME RFTGESVRAY DDLLVRAEEE TAPREVESDE D
101: PSGSGSDSGG SYMHMNYMKN KSMPPSVIYE QRPSSPQRVY EGESSSSSYN PYPPNYYGYS NTGPGPGYYG SSSSSSGASS KPPPPPPSPP RSNGWDFLNP
201: FDTYYPPYTP SRDSRELREE EVHGRPKFAG GGGGGGGGNN QPPPAAVYRE EPPLTSPSPP PVVDKSGAST SGGGDAAMYQ SRPSVSVEKK GVEYEVHVVE
301: KKTVVEDAGN EERRSNAAAP RGGGGGPRAV HEVTKEIETQ FVKAAESGSE IAKLLEVGKH PYGRKHVSKL LHPSLPSTSG GGSSAPAAAA AVTAPPTYAD
401: IEEELASRSR NLSSTLHKLH LWEKKLYHEV KAEEKLRVAH EKKLRKLKRL DERGAEATKV DTTRKLVRDM STKIRIAIQV VDKISVTINK IRDEDLWPQL
501: NALIQGLTRM WKAMLECHQT QSQAIREARG LGPIRASKKL GEEHLEATSL LGHELINWIL GFSSWVSAQK GYVRELNKWL MKCLLYEPEE TPDGIAPFSP
601: GRIGAPPIFV ICNQWSQALD RISEKEVIEA MRSFTTSVLQ LWEQDRLETT AMGQGDAEKR VRNMDREEQR IHREIQALEK KMVLVAPGDG LSLSGNAVYQ
701: SDTSNDSLQG SLQRIFEAME RFTGESVRAY DDLLVRAEEE TAPREVESDE D
001: MGCTSSKLDD LPAVALCRER CAFLEAAIHQ RYALAESHVA YTHSLREIGH SLHLFINHHH RFVASGGANV GDSPRLNLPP QRKGDLDDEA TNSPKKQKLA
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEE
101: SSHHNHNHAH SGSGSDSGHL EFDSDSDEDE EDDDDLDLDS LHHHSPPHHH LGNFPIPESA PMGGYMEQQP GYINPYPNPD MMGHPYSGGG SYMHMNYMKN
201: KSMPPSVVYE QRPTSPQRVY IGESSSSYPY PPQNSYFGYS NPVPGPGPGY YGSSSASTTA AATKPPPPPP SPPRSNGWDF LNPFDTYYPP YTPSRDSREL
301: REEEGIPDLE DDDSHYEVVK EVYGKPKFAA GGGHQPNPAA VHMMREESPS PPLDKSGAST SGGGDVGDAS AYQSRPSVSV EKEGMEYEVH VVEKKVVEDE
401: ERRSNATATR GGGGGGGPRA VPEVAKEIEN QFVKAAESGS EIAKLLEVGK HPYGRKHAAS KMLHGVTPSL PSTSGGTSSS AAAAVVPPTY ADIEEELASR
501: SRNLSSTLHK LHLWEKKLYH EVKAEEKLRL AHEKKLRKLK RLDQRGAEAI KVDKTRKLVR DMSTKIRIAI QVVDKISVTI NKIRDEDLWP QLNALIQGLT
601: RMWKTMLECH QSQCQAIREA QGLGPIRASK KLGDEHLEAT SLLGHELINW ILGFSSWVSA QKGYVKELNK WLMKCLLYEP EETPDGIVPF SPGRIGAPPI
701: FVICNQWSQA LDRISEKEVI EAMRSFTTSV LQLWEQDRLD TMMTGHGDSE KKVRNMDREE QRIQREIQAL EKKMILVAPG DGNSLSISGN VVYQSDTSSD
801: SLQGSLQRIF EAMERFTAES MRAYEDLLER TNEETAPREL EEEEEE
Arabidopsis Description
Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT4G35240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.