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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88193 Canola nucleus 91.2 66.08
CDX80528 Canola nucleus 90.64 66.03
AT5G25590.1 Thale cress nucleus 92.32 63.61
KRH62002 Soybean cytosol 68.54 52.36
KRH52653 Soybean cytosol 68.54 51.48
VIT_04s0008g04200.t01 Wine grape cytosol 66.48 50.21
Zm00001d040901_P001 Maize mitochondrion 23.22 48.82
GSMUA_Achr11P... Banana cytosol 59.74 48.33
GSMUA_Achr3P24800_001 Banana nucleus 53.75 47.6
Solyc08g068100.2.1 Tomato cytosol 62.55 46.07
PGSC0003DMT400037619 Potato plastid 54.68 45.2
GSMUA_Achr1P17130_001 Banana nucleus 48.31 42.5
Os05t0394200-01 Rice nucleus 49.81 40.12
CDY61085 Canola nucleus 55.06 39.41
EES18173 Sorghum nucleus 56.55 39.37
CDY52975 Canola nucleus 55.06 39.36
TraesCS1D01G246700.1 Wheat nucleus 47.19 37.22
TraesCS1B01G258100.1 Wheat nucleus 54.87 36.99
TraesCS1A01G247500.1 Wheat nucleus 54.87 36.95
Os01t0500500-01 Rice nucleus, plasma membrane 52.81 35.38
KXG32552 Sorghum nucleus 51.5 34.9
TraesCS3A01G198900.1 Wheat nucleus 51.87 34.16
TraesCS3D01G202100.2 Wheat nucleus 51.69 34.07
TraesCS3B01G231600.1 Wheat cytosol 52.25 34.07
Zm00001d010488_P008 Maize cytosol 49.44 33.55
HORVU3Hr1G042920.6 Barley cytosol, nucleus 51.87 31.55
CDY28162 Canola cytosol 18.54 24.5
CDY66508 Canola cytosol, nucleus 18.73 23.64
CDX83412 Canola nucleus 28.84 22.88
CDX77992 Canola nucleus 26.78 22.73
CDX73734 Canola nucleus 27.15 22.66
CDX95620 Canola nucleus 28.84 22.16
CDY56992 Canola nucleus 29.21 21.46
CDY42691 Canola nucleus 28.84 21.3
CDX71821 Canola nucleus 27.9 20.99
CDY41178 Canola nucleus 28.28 20.94
CDX69386 Canola nucleus 23.22 20.53
CDX84637 Canola cytosol 25.28 20.12
CDY42005 Canola nucleus 23.03 20.1
CDX79570 Canola cytosol 25.09 19.45
CDX68628 Canola nucleus 23.6 18.64
CDY31475 Canola nucleus 20.79 18.44
CDY17530 Canola cytosol 22.66 17.04
CDX76322 Canola cytosol 22.28 16.83
CDY39136 Canola nucleus 23.6 16.73
CDX82615 Canola nucleus 23.6 16.71
CDY04477 Canola nucleus 22.1 16.41
CDX71474 Canola nucleus 21.91 16.27
CDX69122 Canola nucleus 21.72 15.45
CDX75484 Canola cytosol, plastid 20.04 15.35
CDY07877 Canola cytosol 20.41 15.24
CDX88008 Canola nucleus 20.22 15.1
CDX88372 Canola nucleus 22.1 14.29
CDY04672 Canola nucleus 23.22 14.22
CDY08177 Canola nucleus 23.22 13.92
CDY41788 Canola nucleus 21.72 13.62
CDY28161 Canola nucleus 5.06 13.17
CDY42454 Canola cytosol 16.48 12.55
CDY18335 Canola cytosol 16.48 12.45
CDY29526 Canola peroxisome 20.79 9.66
CDX87516 Canola nucleus 5.99 7.11
Protein Annotations
EnsemblPlants:CDX87081EnsemblPlantsGene:GSBRNA2T00145976001InterPro:DUF630InterPro:DUF632ncoils:CoilPANTHER:PTHR21450
PANTHER:PTHR21450:SF7PFAM:PF04782PFAM:PF04783ProteinID:CDX87081ProteinID:CDX87081.1SEG:seg
UniParc:UPI0004EDD85EMapMan:35.1::::
Description
BnaC09g03960D
Coordinates
chrLK031849:+:345919..348838
Molecular Weight (calculated)
61229.4 Da
IEP (calculated)
7.115
GRAVY (calculated)
-0.750
Length
534 amino acids
Sequence
(BLAST)
001: MGCAQSRVDN EEAVARCKDR RNVIKEAVTA SKAFAAGHFA YAIALKNAGA ALSDYGHGES DQTLDAALEK GNDQEEDEVF RRAVAKTTAS SVNLMKILDG
101: IDDRFLKASE CAQEVSKMLE ATRLHYHSNF ADNRGYVDHS ARVMRVITWN KSLRGISNGE GGKDDQESDE HETHATVLDK LLAWEKKLYD EVKQGELMKI
201: EYQKKVSLLN RHKKRGASAE TVEKTKAAVS HLHTRYIVDM QSMDSTVSEV NRLRDDQLYP RLVSLVEGMA KMWTNMCTQH DTQLQIVGEL KSLEISTSQK
301: ETTKQHHQQT RQFCTVLEEW HVQFERLVTH QKQYINSLNT WLKLNLIPIE SSLKEKVSSP PRPQRPPIQA LLHSWHDRLE KLPDEVAKSA ISSFAAVMKT
401: ILLHQEEEMK LKEKCEETRR EFIRKKQGFE EWYQKHLQKR GPTEEGVDGE EGSGRDDDHV TERRIVVETL KKRLEDEEEA YQRHCVQVRE KSLNSLKIRL
501: PEIFRALSDY AHACADSYEK LRVISQTQKA TVSS
Best Arabidopsis Sequence Match ( AT5G25590.1 )
(BLAST)
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.