Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX88193 | Canola | nucleus | 91.2 | 66.08 |
CDX80528 | Canola | nucleus | 90.64 | 66.03 |
AT5G25590.1 | Thale cress | nucleus | 92.32 | 63.61 |
KRH62002 | Soybean | cytosol | 68.54 | 52.36 |
KRH52653 | Soybean | cytosol | 68.54 | 51.48 |
VIT_04s0008g04200.t01 | Wine grape | cytosol | 66.48 | 50.21 |
Zm00001d040901_P001 | Maize | mitochondrion | 23.22 | 48.82 |
GSMUA_Achr11P... | Banana | cytosol | 59.74 | 48.33 |
GSMUA_Achr3P24800_001 | Banana | nucleus | 53.75 | 47.6 |
Solyc08g068100.2.1 | Tomato | cytosol | 62.55 | 46.07 |
PGSC0003DMT400037619 | Potato | plastid | 54.68 | 45.2 |
GSMUA_Achr1P17130_001 | Banana | nucleus | 48.31 | 42.5 |
Os05t0394200-01 | Rice | nucleus | 49.81 | 40.12 |
CDY61085 | Canola | nucleus | 55.06 | 39.41 |
EES18173 | Sorghum | nucleus | 56.55 | 39.37 |
CDY52975 | Canola | nucleus | 55.06 | 39.36 |
TraesCS1D01G246700.1 | Wheat | nucleus | 47.19 | 37.22 |
TraesCS1B01G258100.1 | Wheat | nucleus | 54.87 | 36.99 |
TraesCS1A01G247500.1 | Wheat | nucleus | 54.87 | 36.95 |
Os01t0500500-01 | Rice | nucleus, plasma membrane | 52.81 | 35.38 |
KXG32552 | Sorghum | nucleus | 51.5 | 34.9 |
TraesCS3A01G198900.1 | Wheat | nucleus | 51.87 | 34.16 |
TraesCS3D01G202100.2 | Wheat | nucleus | 51.69 | 34.07 |
TraesCS3B01G231600.1 | Wheat | cytosol | 52.25 | 34.07 |
Zm00001d010488_P008 | Maize | cytosol | 49.44 | 33.55 |
HORVU3Hr1G042920.6 | Barley | cytosol, nucleus | 51.87 | 31.55 |
CDY28162 | Canola | cytosol | 18.54 | 24.5 |
CDY66508 | Canola | cytosol, nucleus | 18.73 | 23.64 |
CDX83412 | Canola | nucleus | 28.84 | 22.88 |
CDX77992 | Canola | nucleus | 26.78 | 22.73 |
CDX73734 | Canola | nucleus | 27.15 | 22.66 |
CDX95620 | Canola | nucleus | 28.84 | 22.16 |
CDY56992 | Canola | nucleus | 29.21 | 21.46 |
CDY42691 | Canola | nucleus | 28.84 | 21.3 |
CDX71821 | Canola | nucleus | 27.9 | 20.99 |
CDY41178 | Canola | nucleus | 28.28 | 20.94 |
CDX69386 | Canola | nucleus | 23.22 | 20.53 |
CDX84637 | Canola | cytosol | 25.28 | 20.12 |
CDY42005 | Canola | nucleus | 23.03 | 20.1 |
CDX79570 | Canola | cytosol | 25.09 | 19.45 |
CDX68628 | Canola | nucleus | 23.6 | 18.64 |
CDY31475 | Canola | nucleus | 20.79 | 18.44 |
CDY17530 | Canola | cytosol | 22.66 | 17.04 |
CDX76322 | Canola | cytosol | 22.28 | 16.83 |
CDY39136 | Canola | nucleus | 23.6 | 16.73 |
CDX82615 | Canola | nucleus | 23.6 | 16.71 |
CDY04477 | Canola | nucleus | 22.1 | 16.41 |
CDX71474 | Canola | nucleus | 21.91 | 16.27 |
CDX69122 | Canola | nucleus | 21.72 | 15.45 |
CDX75484 | Canola | cytosol, plastid | 20.04 | 15.35 |
CDY07877 | Canola | cytosol | 20.41 | 15.24 |
CDX88008 | Canola | nucleus | 20.22 | 15.1 |
CDX88372 | Canola | nucleus | 22.1 | 14.29 |
CDY04672 | Canola | nucleus | 23.22 | 14.22 |
CDY08177 | Canola | nucleus | 23.22 | 13.92 |
CDY41788 | Canola | nucleus | 21.72 | 13.62 |
CDY28161 | Canola | nucleus | 5.06 | 13.17 |
CDY42454 | Canola | cytosol | 16.48 | 12.55 |
CDY18335 | Canola | cytosol | 16.48 | 12.45 |
CDY29526 | Canola | peroxisome | 20.79 | 9.66 |
CDX87516 | Canola | nucleus | 5.99 | 7.11 |
Protein Annotations
EnsemblPlants:CDX87081 | EnsemblPlantsGene:GSBRNA2T00145976001 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:CDX87081 | ProteinID:CDX87081.1 | SEG:seg |
UniParc:UPI0004EDD85E | MapMan:35.1 | : | : | : | : |
Description
BnaC09g03960D
Coordinates
chrLK031849:+:345919..348838
Molecular Weight (calculated)
61229.4 Da
IEP (calculated)
7.115
GRAVY (calculated)
-0.750
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSRVDN EEAVARCKDR RNVIKEAVTA SKAFAAGHFA YAIALKNAGA ALSDYGHGES DQTLDAALEK GNDQEEDEVF RRAVAKTTAS SVNLMKILDG
101: IDDRFLKASE CAQEVSKMLE ATRLHYHSNF ADNRGYVDHS ARVMRVITWN KSLRGISNGE GGKDDQESDE HETHATVLDK LLAWEKKLYD EVKQGELMKI
201: EYQKKVSLLN RHKKRGASAE TVEKTKAAVS HLHTRYIVDM QSMDSTVSEV NRLRDDQLYP RLVSLVEGMA KMWTNMCTQH DTQLQIVGEL KSLEISTSQK
301: ETTKQHHQQT RQFCTVLEEW HVQFERLVTH QKQYINSLNT WLKLNLIPIE SSLKEKVSSP PRPQRPPIQA LLHSWHDRLE KLPDEVAKSA ISSFAAVMKT
401: ILLHQEEEMK LKEKCEETRR EFIRKKQGFE EWYQKHLQKR GPTEEGVDGE EGSGRDDDHV TERRIVVETL KKRLEDEEEA YQRHCVQVRE KSLNSLKIRL
501: PEIFRALSDY AHACADSYEK LRVISQTQKA TVSS
101: IDDRFLKASE CAQEVSKMLE ATRLHYHSNF ADNRGYVDHS ARVMRVITWN KSLRGISNGE GGKDDQESDE HETHATVLDK LLAWEKKLYD EVKQGELMKI
201: EYQKKVSLLN RHKKRGASAE TVEKTKAAVS HLHTRYIVDM QSMDSTVSEV NRLRDDQLYP RLVSLVEGMA KMWTNMCTQH DTQLQIVGEL KSLEISTSQK
301: ETTKQHHQQT RQFCTVLEEW HVQFERLVTH QKQYINSLNT WLKLNLIPIE SSLKEKVSSP PRPQRPPIQA LLHSWHDRLE KLPDEVAKSA ISSFAAVMKT
401: ILLHQEEEMK LKEKCEETRR EFIRKKQGFE EWYQKHLQKR GPTEEGVDGE EGSGRDDDHV TERRIVVETL KKRLEDEEEA YQRHCVQVRE KSLNSLKIRL
501: PEIFRALSDY AHACADSYEK LRVISQTQKA TVSS
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.