Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18173 | Sorghum | nucleus | 80.69 | 82.79 |
| Os05t0394200-01 | Rice | nucleus | 63.91 | 75.87 |
| TraesCS1A01G247500.1 | Wheat | nucleus | 72.43 | 71.88 |
| TraesCS1B01G258100.1 | Wheat | nucleus | 71.92 | 71.46 |
| TraesCS1D01G246700.1 | Wheat | nucleus | 58.32 | 67.8 |
| GSMUA_Achr11P... | Banana | cytosol | 41.55 | 49.55 |
| CDX87081 | Canola | nucleus | 33.55 | 49.44 |
| KRH62002 | Soybean | cytosol | 41.68 | 46.92 |
| VIT_04s0008g04200.t01 | Wine grape | cytosol | 41.3 | 45.97 |
| Zm00001d040901_P001 | Maize | mitochondrion | 14.74 | 45.67 |
| GSMUA_Achr3P24800_001 | Banana | nucleus | 34.94 | 45.61 |
| KRH52653 | Soybean | cytosol | 41.17 | 45.57 |
| Solyc08g068100.2.1 | Tomato | cytosol | 40.66 | 44.14 |
| CDX80528 | Canola | nucleus | 40.91 | 43.93 |
| CDX88193 | Canola | nucleus | 41.04 | 43.83 |
| Bra009853.1-P | Field mustard | nucleus | 40.91 | 43.81 |
| AT5G25590.1 | Thale cress | nucleus | 42.19 | 42.84 |
| PGSC0003DMT400037619 | Potato | plastid | 34.31 | 41.8 |
| Zm00001d019173_P001 | Maize | nucleus | 31.77 | 33.69 |
| Zm00001d022626_P001 | Maize | nucleus | 21.73 | 26.31 |
| Zm00001d017461_P001 | Maize | cytosol, plastid | 17.03 | 24.41 |
| Zm00001d051338_P002 | Maize | nucleus | 16.14 | 23.18 |
| Zm00001d029946_P003 | Maize | nucleus | 22.74 | 22.98 |
| Zm00001d000039_P001 | Maize | nucleus | 22.11 | 22.28 |
| Zm00001d011231_P001 | Maize | nucleus | 19.06 | 22.09 |
| Zm00001d044312_P001 | Maize | nucleus | 18.04 | 20.26 |
| Zm00001d022598_P001 | Maize | cytosol | 17.41 | 18.95 |
| Zm00001d046839_P001 | Maize | nucleus | 9.53 | 18.47 |
| Zm00001d046842_P001 | Maize | nucleus | 9.53 | 18.47 |
| Zm00001d012496_P001 | Maize | nucleus | 8.39 | 17.6 |
| Zm00001d048891_P002 | Maize | nucleus | 16.39 | 17.29 |
| Zm00001d017553_P001 | Maize | cytosol | 15.63 | 16.33 |
| Zm00001d013369_P001 | Maize | nucleus | 12.58 | 16.31 |
| Zm00001d006286_P001 | Maize | nucleus | 18.93 | 16.3 |
| Zm00001d031530_P006 | Maize | nucleus | 15.88 | 15.86 |
| Zm00001d038223_P001 | Maize | cytosol | 18.17 | 15.77 |
| Zm00001d049762_P007 | Maize | nucleus | 15.88 | 15.68 |
| Zm00001d053766_P001 | Maize | cytosol | 12.33 | 15.52 |
| Zm00001d021452_P001 | Maize | nucleus | 18.55 | 15.52 |
| Zm00001d002669_P002 | Maize | cytosol | 14.99 | 14.96 |
| Zm00001d028960_P001 | Maize | nucleus | 16.65 | 14.84 |
| Zm00001d026130_P001 | Maize | nucleus | 14.87 | 14.83 |
| Zm00001d011823_P002 | Maize | plastid | 16.14 | 14.14 |
Protein Annotations
| EnsemblPlants:Zm00001d010488_P008 | EnsemblPlants:Zm00001d010488_T008 | EnsemblPlantsGene:Zm00001d010488 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil |
| PANTHER:PTHR21450 | PANTHER:PTHR21450:SF7 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:AQK94144.1 | SEG:seg |
| UniParc:UPI0008437215 | UniProt:A0A1D6FRC6 | MapMan:35.1 | : | : | : |
Description
Golgin subfamily A member 4
Coordinates
chr8:+:117495320..117501405
Molecular Weight (calculated)
88092.9 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.611
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCAQSRIEN EEAVARCKER RQLMKAAVAS RNAFAAAHSA YACSLRDTGS ALSEFAHGEG LPPPPPPEAS ADKAAPVAAQ GGIGAAATGA SASGSDAIMP
101: PPPPLDSLLP PPPPLPDFSP SPAKIHRSIS MPLPPSSGNR NPAMLRSDSI REEDEDEAER EEEEEDDGHL DDRRQRLRHR PPLPPPLSPP PPDTPVTPQP
201: PPPPPPPPSS EMKAGVATWD YFFSMDEGMA SIAPDDEEIM AGPEEKYVPP LPPRPPHSPP LAAVPLSEEF EEEPRTPEMP IPPASLPPKP PKRSSKKKGK
301: EKLKAAHHQH TESAPLVTLV TGGKAGKLVT AEMPRVDLLR VLAEIDERFL KASESAGEVS KALEANRMHY HSNFADNRDR GQELVSQRLV VVGLLQSQVS
401: SHTPLSHFSQ QLMKTASALK FIEPWNHCGG WLLYIRWEEF WTLVAPNNMA GEIMKLEYQR KVALLNRQKK HNAAIEVLEK TKAAVTHLHT RYIVDMQSMD
501: STVSEIQYLR DNQLYPRLLD LTDRMAKMWE DMKIHHANQL KIVLNLKSVD IPDSNIETSD YHHSHTRQLR DIVDKWITNF TDFMNCQKEY INALYGWLKL
601: NLIPIESSLK EKVASPPRMQ QPPIKAFLYA WHEHLAKLPD DLAKTAIVTF RAVLDTILGV QDEELKQKEI CEQTRREYIR KARAFEDWCH KHPQPRAIDV
701: DPDSGEGTGH KDVVTEKRFA VESLKSKLDD EIESHNKLSK QVREKSLSIL KAHLPELFRA LTDFSDASFE MYSKLRLMSL MQDQGNN
101: PPPPLDSLLP PPPPLPDFSP SPAKIHRSIS MPLPPSSGNR NPAMLRSDSI REEDEDEAER EEEEEDDGHL DDRRQRLRHR PPLPPPLSPP PPDTPVTPQP
201: PPPPPPPPSS EMKAGVATWD YFFSMDEGMA SIAPDDEEIM AGPEEKYVPP LPPRPPHSPP LAAVPLSEEF EEEPRTPEMP IPPASLPPKP PKRSSKKKGK
301: EKLKAAHHQH TESAPLVTLV TGGKAGKLVT AEMPRVDLLR VLAEIDERFL KASESAGEVS KALEANRMHY HSNFADNRDR GQELVSQRLV VVGLLQSQVS
401: SHTPLSHFSQ QLMKTASALK FIEPWNHCGG WLLYIRWEEF WTLVAPNNMA GEIMKLEYQR KVALLNRQKK HNAAIEVLEK TKAAVTHLHT RYIVDMQSMD
501: STVSEIQYLR DNQLYPRLLD LTDRMAKMWE DMKIHHANQL KIVLNLKSVD IPDSNIETSD YHHSHTRQLR DIVDKWITNF TDFMNCQKEY INALYGWLKL
601: NLIPIESSLK EKVASPPRMQ QPPIKAFLYA WHEHLAKLPD DLAKTAIVTF RAVLDTILGV QDEELKQKEI CEQTRREYIR KARAFEDWCH KHPQPRAIDV
701: DPDSGEGTGH KDVVTEKRFA VESLKSKLDD EIESHNKLSK QVREKSLSIL KAHLPELFRA LTDFSDASFE MYSKLRLMSL MQDQGNN
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.