Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU88702 | Sorghum | cytosol | 52.83 | 88.89 |
| TraesCS2D01G161700.1 | Wheat | nucleus | 67.79 | 69.19 |
| TraesCS2B01G181100.1 | Wheat | nucleus | 67.39 | 69.16 |
| TraesCS2A01G155900.1 | Wheat | nucleus | 67.92 | 69.14 |
| Os07t0211900-01 | Rice | plasma membrane | 66.04 | 66.49 |
| Solyc03g120140.2.1 | Tomato | cytosol | 19.54 | 50.52 |
| VIT_09s0002g04590.t01 | Wine grape | nucleus | 38.41 | 46.57 |
| Zm00001d040901_P001 | Maize | mitochondrion | 14.42 | 42.13 |
| KRH09858 | Soybean | nucleus | 37.74 | 37.63 |
| KRH23466 | Soybean | nucleus | 37.87 | 37.52 |
| CDY52975 | Canola | nucleus | 36.25 | 36.01 |
| CDY61085 | Canola | nucleus | 36.12 | 35.92 |
| Bra018963.1-P | Field mustard | nucleus | 36.25 | 35.87 |
| AT1G52320.5 | Thale cress | nucleus | 38.54 | 35.84 |
| Zm00001d010488_P008 | Maize | cytosol | 33.69 | 31.77 |
| Zm00001d022626_P001 | Maize | nucleus | 20.62 | 23.54 |
| Zm00001d017461_P001 | Maize | cytosol, plastid | 16.31 | 22.04 |
| Zm00001d011231_P001 | Maize | nucleus | 19.81 | 21.65 |
| Zm00001d029946_P003 | Maize | nucleus | 22.1 | 21.05 |
| Zm00001d000039_P001 | Maize | nucleus | 22.1 | 21.0 |
| Zm00001d044312_P001 | Maize | nucleus | 19.54 | 20.68 |
| Zm00001d051338_P002 | Maize | nucleus | 15.23 | 20.62 |
| Zm00001d022598_P001 | Maize | cytosol | 18.73 | 19.23 |
| Zm00001d017553_P001 | Maize | cytosol | 17.12 | 16.87 |
| Zm00001d053766_P001 | Maize | cytosol | 14.15 | 16.8 |
| Zm00001d048891_P002 | Maize | nucleus | 16.85 | 16.76 |
| Zm00001d046839_P001 | Maize | nucleus | 9.16 | 16.75 |
| Zm00001d046842_P001 | Maize | nucleus | 9.16 | 16.75 |
| Zm00001d012496_P001 | Maize | nucleus | 7.95 | 15.73 |
| Zm00001d006286_P001 | Maize | nucleus | 19.14 | 15.54 |
| Zm00001d049762_P007 | Maize | nucleus | 16.31 | 15.18 |
| Zm00001d031530_P006 | Maize | nucleus | 16.04 | 15.1 |
| Zm00001d026130_P001 | Maize | nucleus | 15.77 | 14.83 |
| Zm00001d002669_P002 | Maize | cytosol | 15.77 | 14.83 |
| Zm00001d038223_P001 | Maize | cytosol | 18.06 | 14.77 |
| Zm00001d021452_P001 | Maize | nucleus | 18.73 | 14.77 |
| Zm00001d013369_P001 | Maize | nucleus | 11.99 | 14.66 |
| Zm00001d028960_P001 | Maize | nucleus | 17.25 | 14.5 |
| Zm00001d011823_P002 | Maize | plastid | 17.12 | 14.14 |
Protein Annotations
| EnsemblPlants:Zm00001d019173_P001 | EnsemblPlants:Zm00001d019173_T001 | EnsemblPlantsGene:Zm00001d019173 | EntrezGene:103632124 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | InterPro:DUF630 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 |
| PANTHER:PTHR21450:SF18 | PFAM:PF04782 | PFAM:PF04783 | ProteinID:ONM52417.1 | SEG:seg | UniParc:UPI000221EAA5 |
| UniProt:A0A1D6HW11 | MapMan:35.1 | : | : | : | : |
Description
Golgin subfamily A member 4
Coordinates
chr7:-:20343147..20347941
Molecular Weight (calculated)
82089.8 Da
IEP (calculated)
6.855
GRAVY (calculated)
-0.699
Length
742 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCGPSKEDA EGGAESRCRE RKHLLSAAVH ARHALAGAHA GHTAALKNVG AALSDYAAGE TDRHDAVLVP RSASAAAALS AGQGSAATVV KALPSPLDAL
101: LPPPPPPGAG DGDGDDGGHT TLHRSMSAPD IQLQPPIRKG RSGEAPIMEE DGEGDAPGDD AGRRREDDDP QLQPPPPPPP PANNPPPSRS PPPVPAAKAN
201: LERATAEGNS WKDYLFGSPD AMPGPPPTLD PSASAAAESS WAAERRMPAP PPPPPESDQQ PTKQPQPVPS AEEIAEGKKP AAELVTRRAR KPEGKKGRVV
301: MVTPQPARLG DILRRLDDEF LKASQGAHEV SKMLEAARMH YHSNFAETRG FVDHSARVMQ AITWNRSFKG IPPPENVKNE LADDEWETHA TVLDKLLAWE
401: KKLCHEVKEF EVIKVTYQRK LAVLNKKKQS GASSSSVEKT KSIVSHLHTK YIVDLQTMES TIAEIDRLRD QQLYPKLLEL VKGFAHMWDV MYARHKAQLK
501: IITELKASDI SVATRETSEQ HHERTLQLWN VVQEWHVQFD RFMTYQKEYI GSLYNWIKLN VIPIDTNIKP NSSQPHEATP PIKRLLHAWH DILEKLPDNE
601: TKKAIHTFAE VVNTILVHQD DELKLRLKID DIRRDLEKKR KQFDSWAQKN WDRGASIPDG DNPGRVDPAA ERKAVVDRVE NALKDLEDNY RTQCKVVRDK
701: SLNLLRSNLP ELFRAVSEFS LQSAGYFKGL WSIAQTNDQL DD
101: LPPPPPPGAG DGDGDDGGHT TLHRSMSAPD IQLQPPIRKG RSGEAPIMEE DGEGDAPGDD AGRRREDDDP QLQPPPPPPP PANNPPPSRS PPPVPAAKAN
201: LERATAEGNS WKDYLFGSPD AMPGPPPTLD PSASAAAESS WAAERRMPAP PPPPPESDQQ PTKQPQPVPS AEEIAEGKKP AAELVTRRAR KPEGKKGRVV
301: MVTPQPARLG DILRRLDDEF LKASQGAHEV SKMLEAARMH YHSNFAETRG FVDHSARVMQ AITWNRSFKG IPPPENVKNE LADDEWETHA TVLDKLLAWE
401: KKLCHEVKEF EVIKVTYQRK LAVLNKKKQS GASSSSVEKT KSIVSHLHTK YIVDLQTMES TIAEIDRLRD QQLYPKLLEL VKGFAHMWDV MYARHKAQLK
501: IITELKASDI SVATRETSEQ HHERTLQLWN VVQEWHVQFD RFMTYQKEYI GSLYNWIKLN VIPIDTNIKP NSSQPHEATP PIKRLLHAWH DILEKLPDNE
601: TKKAIHTFAE VVNTILVHQD DELKLRLKID DIRRDLEKKR KQFDSWAQKN WDRGASIPDG DNPGRVDPAA ERKAVVDRVE NALKDLEDNY RTQCKVVRDK
701: SLNLLRSNLP ELFRAVSEFS LQSAGYFKGL WSIAQTNDQL DD
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.