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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d019173_P001 Maize nucleus 88.89 52.83
Solyc03g120140.2.1 Tomato cytosol 31.52 48.43
Os07t0211900-01 Rice plasma membrane 79.14 47.35
TraesCS2A01G155900.1 Wheat nucleus 78.0 47.19
TraesCS2B01G181100.1 Wheat nucleus 77.32 47.16
TraesCS2D01G161700.1 Wheat nucleus 77.55 47.04
VIT_09s0002g04590.t01 Wine grape nucleus 53.29 38.4
KRH23466 Soybean nucleus 51.25 30.17
KRH09858 Soybean nucleus 50.57 29.97
CDY52975 Canola nucleus 48.98 28.92
CDY61085 Canola nucleus 48.75 28.82
Bra018963.1-P Field mustard nucleus 48.98 28.8
EES18173 Sorghum nucleus 48.53 27.9
KXG32552 Sorghum nucleus 48.75 27.28
AT1G52320.5 Thale cress nucleus 49.21 27.19
KXG36086 Sorghum nucleus 27.44 18.45
KXG31098 Sorghum cytosol, plastid 21.32 16.23
EER94480 Sorghum nucleus 28.57 16.05
EES00973 Sorghum nucleus 23.58 14.81
EER97113 Sorghum cytosol 21.77 13.26
EES08807 Sorghum nucleus 20.86 12.8
EES06355 Sorghum cytosol 17.23 12.4
KXG39486 Sorghum nucleus 22.22 11.81
EER97130 Sorghum nucleus 21.09 10.19
OQU80872 Sorghum nucleus 18.37 10.18
OQU85656 Sorghum cytosol 17.23 9.92
EES19545 Sorghum nucleus 20.18 9.87
KXG34164 Sorghum plastid 19.27 9.16
KXG26898 Sorghum cytosol 15.42 8.58
Protein Annotations
EnsemblPlants:OQU88702EnsemblPlantsGene:SORBI_3002G076866GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0016020
InterPro:DUF632ncoils:CoilPANTHER:PTHR21450PANTHER:PTHR21450:SF18PFAM:PF04782ProteinID:OQU88702
ProteinID:OQU88702.1UniParc:UPI0009DC88E4UniProt:A0A1W0W2V1MapMan:35.1::
Description
hypothetical protein
Coordinates
chr2:-:8024445..8028185
Molecular Weight (calculated)
51545.4 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.643
Length
441 amino acids
Sequence
(BLAST)
001: MVPQTRLGDI LRRLDDHFLK ASQSAHEVSK LLEAARMHYH SNFAETRGFV DHSARVMQVI TWNRSFKGIP QPENVKNELD DDEWETHATV LDKLLAWEKK
101: LCHEVKEFEI IKVTYQRKLA VLNKKKQRGV SSSSIEKTKS IVSHLHTKYI VDLQTMESTV AEIDRLRDQQ LYPKLLELVK GLSHMWDVMY TQHKAQLRII
201: TELKASDISV STRETSEQHN ERTVQLWNIV QEWHVQFDRF MAYQKEYVGS LYSWIKLNVI PIDTNLKPNS SQPHETTPPI KRLLHAWHDI LEKLPVDATK
301: RAIHTFAEVV HTILVHQDEE LKLRMKIEET RRDFEKKRRQ FDDWAQKNWD RGASIPDGDN PAPRADPAAE RKAVVDKLEN ALKDLEDSYK TQCKVVRDKS
401: LNLLRSNLPE LFRVVSEFSL QSAGYFKGLW SIAQTNDQLD D
Best Arabidopsis Sequence Match ( AT5G25590.1 )
(BLAST)
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.