Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d019173_P001 | Maize | nucleus | 88.89 | 52.83 |
Solyc03g120140.2.1 | Tomato | cytosol | 31.52 | 48.43 |
Os07t0211900-01 | Rice | plasma membrane | 79.14 | 47.35 |
TraesCS2A01G155900.1 | Wheat | nucleus | 78.0 | 47.19 |
TraesCS2B01G181100.1 | Wheat | nucleus | 77.32 | 47.16 |
TraesCS2D01G161700.1 | Wheat | nucleus | 77.55 | 47.04 |
VIT_09s0002g04590.t01 | Wine grape | nucleus | 53.29 | 38.4 |
KRH23466 | Soybean | nucleus | 51.25 | 30.17 |
KRH09858 | Soybean | nucleus | 50.57 | 29.97 |
CDY52975 | Canola | nucleus | 48.98 | 28.92 |
CDY61085 | Canola | nucleus | 48.75 | 28.82 |
Bra018963.1-P | Field mustard | nucleus | 48.98 | 28.8 |
EES18173 | Sorghum | nucleus | 48.53 | 27.9 |
KXG32552 | Sorghum | nucleus | 48.75 | 27.28 |
AT1G52320.5 | Thale cress | nucleus | 49.21 | 27.19 |
KXG36086 | Sorghum | nucleus | 27.44 | 18.45 |
KXG31098 | Sorghum | cytosol, plastid | 21.32 | 16.23 |
EER94480 | Sorghum | nucleus | 28.57 | 16.05 |
EES00973 | Sorghum | nucleus | 23.58 | 14.81 |
EER97113 | Sorghum | cytosol | 21.77 | 13.26 |
EES08807 | Sorghum | nucleus | 20.86 | 12.8 |
EES06355 | Sorghum | cytosol | 17.23 | 12.4 |
KXG39486 | Sorghum | nucleus | 22.22 | 11.81 |
EER97130 | Sorghum | nucleus | 21.09 | 10.19 |
OQU80872 | Sorghum | nucleus | 18.37 | 10.18 |
OQU85656 | Sorghum | cytosol | 17.23 | 9.92 |
EES19545 | Sorghum | nucleus | 20.18 | 9.87 |
KXG34164 | Sorghum | plastid | 19.27 | 9.16 |
KXG26898 | Sorghum | cytosol | 15.42 | 8.58 |
Protein Annotations
EnsemblPlants:OQU88702 | EnsemblPlantsGene:SORBI_3002G076866 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF18 | PFAM:PF04782 | ProteinID:OQU88702 |
ProteinID:OQU88702.1 | UniParc:UPI0009DC88E4 | UniProt:A0A1W0W2V1 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr2:-:8024445..8028185
Molecular Weight (calculated)
51545.4 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.643
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPQTRLGDI LRRLDDHFLK ASQSAHEVSK LLEAARMHYH SNFAETRGFV DHSARVMQVI TWNRSFKGIP QPENVKNELD DDEWETHATV LDKLLAWEKK
101: LCHEVKEFEI IKVTYQRKLA VLNKKKQRGV SSSSIEKTKS IVSHLHTKYI VDLQTMESTV AEIDRLRDQQ LYPKLLELVK GLSHMWDVMY TQHKAQLRII
201: TELKASDISV STRETSEQHN ERTVQLWNIV QEWHVQFDRF MAYQKEYVGS LYSWIKLNVI PIDTNLKPNS SQPHETTPPI KRLLHAWHDI LEKLPVDATK
301: RAIHTFAEVV HTILVHQDEE LKLRMKIEET RRDFEKKRRQ FDDWAQKNWD RGASIPDGDN PAPRADPAAE RKAVVDKLEN ALKDLEDSYK TQCKVVRDKS
401: LNLLRSNLPE LFRVVSEFSL QSAGYFKGLW SIAQTNDQLD D
101: LCHEVKEFEI IKVTYQRKLA VLNKKKQRGV SSSSIEKTKS IVSHLHTKYI VDLQTMESTV AEIDRLRDQQ LYPKLLELVK GLSHMWDVMY TQHKAQLRII
201: TELKASDISV STRETSEQHN ERTVQLWNIV QEWHVQFDRF MAYQKEYVGS LYSWIKLNVI PIDTNLKPNS SQPHETTPPI KRLLHAWHDI LEKLPVDATK
301: RAIHTFAEVV HTILVHQDEE LKLRMKIEET RRDFEKKRRQ FDDWAQKNWD RGASIPDGDN PAPRADPAAE RKAVVDKLEN ALKDLEDSYK TQCKVVRDKS
401: LNLLRSNLPE LFRVVSEFSL QSAGYFKGLW SIAQTNDQLD D
001: MGCAQSRVDN EEAVARCKER RNVIKEAVSA SKAFAAGHFA YAIALKNTGA ALSDYGHGES DQKALDDVLL DQQHYEKQSR NNVDPASPQP PPPPPIENLP
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
101: PPPPPLPKFS PSPIKRAISL PSMAVRGRKV QTLDGMAIEE EEEDEEEEEE VKGSGRDTAQ EEEEPRTPEN VGKSNGRKRL EKTTPEIVSA SPANSMAWDY
201: FFMVENMPGP NLDDREVRNG YENQSSHFQF NEEDDEEEEE EERSGIYRKK SGSGKVVEEM EPKTPEKVEE EEEEDEEEDE EEEEEEEEEV VVEVKKKKKG
301: KAKIEHSSTA PPEFRRAVAK TSAAASSSVN LMKILDEIDD RFLKASECAQ EVSKMLEATR LHYHSNFADN RGYVDHSARV MRVITWNKSL RGISNGEGGK
401: DDQESDEHET HATVLDKLLA WEKKLYDEVK QGELMKIEYQ KKVSLLNRHK KRGASAETVE KTKAAVSHLH TRYIVDMQSM DSTVSEVNRL RDDQLYPRLV
501: ALVEGMAKMW TNMCIHHDTQ LGIVGELKAL EISTSLKETT KQHHHQTRQF CTVLEEWHVQ FDTLVTHQKQ YINSLNNWLK LNLIPIESSL KEKVSSPPRP
601: QRPPIQALLH SWHDRLEKLP DEVAKSAISS FAAVIKTILL HQEEEMKLKE KCEETRREFI RKKQGFEDWY QKHLQKRGPT EEAEGGDDAT TSSRDHVTER
701: RIAVETLKKR LEEEEEAHQR HCVQVREKSL NSLKIRLPEI FRALSDYAHA CADSYEKLRI ISQSQKSNGG ATESS
Arabidopsis Description
DNA ligase (DUF630 and DUF632) [Source:UniProtKB/TrEMBL;Acc:Q8RWW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.