Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18335 | Canola | cytosol | 66.25 | 67.47 |
| CDY42454 | Canola | cytosol | 65.56 | 67.33 |
| Bra002985.1-P | Field mustard | nucleus | 65.56 | 65.19 |
| VIT_07s0031g02650.t01 | Wine grape | cytosol | 16.81 | 34.28 |
| GSMUA_Achr3P22040_001 | Banana | cytosol | 25.14 | 26.38 |
| GSMUA_Achr9P08510_001 | Banana | nucleus | 25.28 | 23.27 |
| AT1G21740.1 | Thale cress | cytosol | 29.72 | 22.46 |
| AT1G20530.1 | Thale cress | cytosol | 18.75 | 21.99 |
| AT1G77500.1 | Thale cress | nucleus | 26.81 | 21.96 |
| GSMUA_Achr3P19020_001 | Banana | cytosol | 25.0 | 21.82 |
| Os01t0960200-00 | Rice | nucleus | 7.92 | 21.27 |
| AT2G17110.1 | Thale cress | nucleus | 21.53 | 21.15 |
| AT4G35240.1 | Thale cress | nucleus | 24.03 | 20.0 |
| HORVU3Hr1G110830.5 | Barley | cytosol, nucleus | 19.17 | 19.86 |
| Zm00001d011823_P002 | Maize | plastid | 24.31 | 19.49 |
| TraesCS1D01G265000.1 | Wheat | nucleus | 24.17 | 19.38 |
| AT1G02110.1 | Thale cress | nucleus | 18.89 | 19.35 |
| TraesCS1B01G275500.1 | Wheat | nucleus | 23.89 | 19.3 |
| EES19545 | Sorghum | nucleus | 24.17 | 19.29 |
| TraesCS1A01G264800.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 23.89 | 19.28 |
| TraesCS3A01G503100.1 | Wheat | cytosol | 19.72 | 19.19 |
| Zm00001d038223_P001 | Maize | cytosol | 24.17 | 19.18 |
| AT4G30130.3 | Thale cress | nucleus | 19.31 | 19.17 |
| TraesCS3D01G509700.1 | Wheat | plastid | 24.17 | 18.91 |
| KXG34164 | Sorghum | plastid | 24.03 | 18.64 |
| TraesCS3B01G566500.1 | Wheat | plastid | 24.17 | 18.53 |
| AT2G19090.1 | Thale cress | nucleus | 20.83 | 18.43 |
| Os05t0425000-00 | Rice | nucleus | 22.5 | 18.31 |
| AT4G39790.1 | Thale cress | plastid | 16.11 | 17.66 |
| AT3G60320.1 | Thale cress | nucleus | 18.33 | 16.58 |
| AT2G27090.2 | Thale cress | nucleus | 16.39 | 15.88 |
| AT3G51290.2 | Thale cress | cytosol | 17.36 | 15.66 |
| AT2G34670.2 | Thale cress | nucleus | 13.61 | 14.12 |
| AT1G52320.5 | Thale cress | nucleus | 15.28 | 13.78 |
| AT5G25590.1 | Thale cress | nucleus | 14.31 | 13.29 |
Protein Annotations
| MapMan:35.1 | EntrezGene:835536 | ProteinID:AED96500.1 | InterPro:AH/BAR_dom_sf | ArrayExpress:AT5G54480 | EnsemblPlantsGene:AT5G54480 |
| RefSeq:AT5G54480 | TAIR:AT5G54480 | RefSeq:AT5G54480-TAIR-G | EnsemblPlants:AT5G54480.1 | TAIR:AT5G54480.1 | Unigene:At.55548 |
| ProteinID:BAA97521.1 | ncoils:Coil | InterPro:DUF630 | InterPro:DUF632 | InterPro:IPR027267 | RefSeq:NP_200259.1 |
| PFAM:PF04782 | PFAM:PF04783 | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF8 | UniProt:Q9LSQ7 | SUPFAM:SSF103657 |
| UniParc:UPI00000A3E34 | SEG:seg | : | : | : | : |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9LSQ7]
Coordinates
chr5:+:22118004..22120166
Molecular Weight (calculated)
81857.0 Da
IEP (calculated)
4.862
GRAVY (calculated)
-0.658
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVASKGDS NTPLLNLCKE RKELIKAARD ARYHLARSHL LYFKSLLDFS KALKQFLHKD LVVIPYSDDD SSSSDIICSG SDSDSDTDSD SDSDSDCIVC
101: DQPQTAPLSN NDDQSQRKPV VGDGTCGASN NGQEGMEKSR EGLGFEGTQF VSDPSEDEMK SSQHPYDILG FYKSVYNMQQ CEIIELDHRD DEVESDGFRE
201: IREREGIPDL EPESDYNSLI RKNKKKNKKK KKKKNVRESS SVASEIDKRD VEANTCNGQV ADETDNSNEA CAQETENTPE IVTEEVTRSD EEVEVVARSD
301: EEVSDEAYES SSSCFSESSG SGLTDLRKVV ERINSICGKA AGNSEVSELL EVSRVVYHQP LGSQFKGFAS RVIGSSGTTT RDLVLKRRFR LDDLAVSLSM
401: TLEKLYMWEK KLHAEVTAEE KLRVAYEKAY KILNNLDQNG AESSELYEAE TLVKLHLSKV NVSVRAVESI SMRIHKIRDE ELSFQVIEII NGFKTMWRFL
501: AKCHHKQFRV IARSKSCVHI VENGSSSRKA TQQVEKQIRR YRESLKGYID AHRGFVKLLN EWLNRIIMED DETETEAPEI FRVCSEWLRE IENVDTIKVL
601: SVVEEMRLRF QGLGFKQVEE EKQRMRTERL SKELEKKTKE LEEIRGTRGS SPTSNMVEPE LLFLRESVTQ ETEKHERLIR ELNDAVSMSL QECMVPVFEA
701: LGDFCFANFK AYQNIVIVTT
101: DQPQTAPLSN NDDQSQRKPV VGDGTCGASN NGQEGMEKSR EGLGFEGTQF VSDPSEDEMK SSQHPYDILG FYKSVYNMQQ CEIIELDHRD DEVESDGFRE
201: IREREGIPDL EPESDYNSLI RKNKKKNKKK KKKKNVRESS SVASEIDKRD VEANTCNGQV ADETDNSNEA CAQETENTPE IVTEEVTRSD EEVEVVARSD
301: EEVSDEAYES SSSCFSESSG SGLTDLRKVV ERINSICGKA AGNSEVSELL EVSRVVYHQP LGSQFKGFAS RVIGSSGTTT RDLVLKRRFR LDDLAVSLSM
401: TLEKLYMWEK KLHAEVTAEE KLRVAYEKAY KILNNLDQNG AESSELYEAE TLVKLHLSKV NVSVRAVESI SMRIHKIRDE ELSFQVIEII NGFKTMWRFL
501: AKCHHKQFRV IARSKSCVHI VENGSSSRKA TQQVEKQIRR YRESLKGYID AHRGFVKLLN EWLNRIIMED DETETEAPEI FRVCSEWLRE IENVDTIKVL
601: SVVEEMRLRF QGLGFKQVEE EKQRMRTERL SKELEKKTKE LEEIRGTRGS SPTSNMVEPE LLFLRESVTQ ETEKHERLIR ELNDAVSMSL QECMVPVFEA
701: LGDFCFANFK AYQNIVIVTT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.