Factsheet for GSMUA_Achr7P16020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28162	Canola	cytosol	32.64	50.49
CDY66508	Canola	cytosol, nucleus	33.28	49.17
GSMUA_Achr3P00490_001	Banana	nucleus	47.04	47.27
GSMUA_Achr7P04930_001	Banana	nucleus	44.32	46.71
VIT_11s0103g00310.t01	Wine grape	nucleus	56.16	45.76
Bra011166.1-P	Field mustard	nucleus	46.72	44.04
PGSC0003DMT400015690	Potato	nucleus	53.6	43.85
KRH19063	Soybean	nucleus	52.48	43.79
Solyc07g047830.2.1	Tomato	nucleus	53.44	43.77
CDX68628	Canola	nucleus	47.04	43.49
KRH02818	Soybean	nucleus	51.52	43.22
KRH12287	Soybean	nucleus	52.16	42.17
AT4G30130.3	Thale cress	nucleus	48.0	41.38
KRH37304	Soybean	nucleus	50.4	41.18
CDX82615	Canola	nucleus	48.48	40.19
CDY39136	Canola	nucleus	48.32	40.11
AT2G19090.1	Thale cress	nucleus	50.24	38.57
Bra038839.1-P	Field mustard	nucleus	47.84	38.04
Bra038563.1-P	Field mustard	nucleus	48.8	37.61
CDY28161	Canola	nucleus	11.84	36.1
GSMUA_Achr1P07380_001	Banana	cytosol, nucleus, peroxisome	26.08	29.74
GSMUA_Achr8P34030_001	Banana	cytosol	26.56	27.85
GSMUA_Achr2P22150_001	Banana	cytosol	26.08	27.63
GSMUA_Achr11P...	Banana	cytosol	24.96	23.42
GSMUA_Achr6P32100_001	Banana	cytosol	22.4	23.26
GSMUA_Achr3P22040_001	Banana	cytosol	24.16	22.01
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	23.2	22.0
GSMUA_Achr1P18120_001	Banana	cytosol	23.68	21.76
GSMUA_Achr1P26500_001	Banana	cytosol	18.24	21.63
GSMUA_Achr9P05210_001	Banana	nucleus	22.08	21.36
GSMUA_Achr3P14690_001	Banana	nucleus	24.0	21.31
GSMUA_Achr11P...	Banana	mitochondrion	22.72	21.13
GSMUA_Achr7P04020_001	Banana	cytosol	23.52	21.0
GSMUA_Achr3P24800_001	Banana	nucleus	20.0	20.73
GSMUA_Achr1P17130_001	Banana	nucleus	19.52	20.1
GSMUA_Achr3P00690_001	Banana	nucleus	15.84	19.53
GSMUA_Achr9P08510_001	Banana	nucleus	24.32	19.44
GSMUA_Achr11P...	Banana	cytosol	20.32	19.24
GSMUA_Achr9P30410_001	Banana	cytosol	18.72	19.02
GSMUA_Achr11P...	Banana	nucleus	20.96	18.12
GSMUA_Achr5P00570_001	Banana	cytosol	19.2	17.96
GSMUA_Achr3P19020_001	Banana	cytosol	23.68	17.94
GSMUA_Achr4P21640_001	Banana	nucleus	19.68	17.57
GSMUA_Achr8P10940_001	Banana	nucleus	20.64	17.53

Protein Annotations

EnsemblPlants:GSMUA_Achr7P16020_001	EnsemblPlants:GSMUA_Achr7T16020_001	EnsemblPlantsGene:GSMUA_Achr7G16020_001	InterPro:DUF630	InterPro:DUF632	PANTHER:PTHR21450
PANTHER:PTHR21450:SF3	PFAM:PF04782	PFAM:PF04783	SEG:seg	UniParc:UPI00029541B0	UniProt:M0THY9
MapMan:35.1	:	:	:	:	:

Description

pumilio domain-containing protein PPD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G16020_001]

Coordinates

chr7:+:12922524..12927412

Molecular Weight (calculated)

69114.7 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.487

Length

625 amino acids

Sequence
(BLAST)

001: MGCSASRLED EEAVQMCKDR RNFIKQAIEQ RIRFASGHIA YIQSLKRISR ALSDFVDGQE HYDSFSDSFT TPPFTPAQNR SRESTLHIAR YLRSGGSTSV
101: SVEECPQPTE TVRINSYYPM DHYGSDDFFA TQSTPLNSSF FSSTYDRPSY PPASPRNSQW DSFWNPFSSL DTYGYAYQGK CVQPEIQNER HEVDSGHTRI
201: KDAEKEVVGK RESAEETPGF TVYLNRRPTS MTEIMKDIEC QFIRICDCAH EVSVLLEASR AQYSSTSSEI AVKMMNPIVL FRSASSRSSS SRFFHAAPSS
301: GYDGYESSSD YSQESCMISG SHQSTLDRLY EWEKKLYEEV KAGERIRIAF EKKYMQLRNQ DVHGEEPSAV EKTRAVVRDL HTRLKVSIHS VESVSKRIET
401: LRDEELHPQL IELLQGLAKM WRTTADCHRI QKRTIDEAKL LILASAAAAG KGSEDAAPQP RHPRAAAALE AELRNWRACL EAWVAAQRAY ARALAGWALR
501: CGDPGGGGAR SPLSPPRPSG GAPAVLGLCV QWSRLLESVG EAQVVDGLDF FAAGIGSVSG RAAAEEEGDG DDAAAAAAMA TAEMARRVLC AGMSVAVSSL
601: ADFAARSAEG YEVLVRWGGD RRAES

Best Arabidopsis Sequence Match ( AT2G19090.1 )
(BLAST)

001: MGCSHSKLDD EEAVQICKDR KRFIKQAIEH RTKFASGHIA YIHSLRKVSD ALHDFILQGD NNNEFVPTLC QDSFVTPVKR MPQRRRRSSR SNSGEFISIS
101: PSSIPPKMIQ GRPRSNVKAN YLMANRSRPV RVEQRSPETF RVETFSPPSS SNQYGESDGF FGMNMNMNTS ASTSSSFWNP LSSPEQRLSS HNIPPPSPQN
201: SQWDFFWNPF SSLDYYGYNS YDRGSVDSRS GIDDEIRGLR RVREEEGIPD LEEDDEPHKP EPVVNVRFQN HNPNPKATEE NRGKVDKSCC NEEVKVEDVD
301: EDEDEDGDED DDEFTDSGCE TENEGDEKCV APPTQEQRKA EVCRGGEATG NVVGVGKVQE MKNVVGVRDD AKTTGFTVYV NRRPTSMAEV IKDLEDQFTT
401: ICDAAKEVSG LLEAGRAQYT SSFNDHSARK MLNPVALFRS GSSRSSSSRF LITSSGGSRE SGSESRSDVS DESCMISGSH QTTLDRLFAW EKKLYDEVRS
501: GERVRRAYEK KCMQLRNQDV KGDDPLAVDK TRATIRDLDT QIKVSIHSIE SISKRIETLR DQELLPQLLE LVEGLTRMWK VMAESHQIQK RTLDEAKLLL
601: AGTPVSKRHK KRQPPIMPEA INSQRLAQSA LNLEAQLRNW RTCFEFWITS QRSYMKALSG WLLRCFRCDP DPEKVRLSSC LHPIYRVCIQ WSRLLNSLNE
701: KPVLDKLEFF ASGMGSIYAR QVREDPNWSG SGSRRYSGSE SMELVVADKG EEDVVMTAEK LAEVAVKVLC HGMSVAVSSL AEFSINSADE HSKLVSQPAD
801: DASEQQPPDV NFNS

Arabidopsis Description

Protein of unknown function (DUF630 and DUF632) [Source:TAIR;Acc:AT2G19090]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.