Factsheet for PGSC0003DMT400060254

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054320.2.1	Tomato	cytosol	94.7	94.7
PGSC0003DMT400060250	Potato	cytosol	89.1	89.1
PGSC0003DMT400011790	Potato	cytosol	65.11	64.71
GSMUA_Achr3P08130_001	Banana	cytosol	61.99	62.78
PGSC0003DMT400029422	Potato	cytosol	63.24	62.46
KRH50813	Soybean	cytosol	41.74	62.04
PGSC0003DMT400046206	Potato	peroxisome	61.37	61.95
VIT_05s0077g01990.t01	Wine grape	cytoskeleton, cytosol, peroxisome	61.06	61.83
GSMUA_Achr8P10290_001	Banana	cytosol	61.37	61.76
VIT_05s0077g02010.t01	Wine grape	cytosol	60.44	61.2
PGSC0003DMT400081311	Potato	cytosol	60.44	61.01
PGSC0003DMT400063718	Potato	cytosol	59.5	60.83
VIT_05s0077g02020.t01	Wine grape	cytosol	59.5	60.25
GSMUA_AchrUn_...	Banana	peroxisome	59.19	59.94
PGSC0003DMT400029420	Potato	cytosol	62.31	59.88
KRH02278	Soybean	cytosol	65.73	59.6
GSMUA_Achr8P22510_001	Banana	peroxisome	48.6	57.14
CDY09722	Canola	cytosol	57.63	56.23
TraesCS7B01G129100.1	Wheat	cytosol	56.39	56.21
TraesCS3D01G180600.1	Wheat	peroxisome	56.39	56.21
TraesCS7D01G228900.1	Wheat	cytosol	53.89	56.17
TraesCS3A01G175200.2	Wheat	peroxisome	56.07	55.9
TraesCS3B01G204900.1	Wheat	peroxisome	56.07	55.9
Bra012747.1-P	Field mustard	cytosol	57.32	55.76
CDX90550	Canola	cytosol	57.32	55.76
Os05t0273800-01	Rice	cytosol, peroxisome, plastid	57.01	55.29
Os01t0255000-01	Rice	cytosol	55.45	55.28
Bra012750.1-P	Field mustard	cytosol	55.45	54.6
CDY09727	Canola	cytosol	55.45	54.43
TraesCS7A01G225600.1	Wheat	cytosol	54.52	54.35
CDX90553	Canola	cytosol	55.14	54.29
EES00506	Sorghum	cytosol	54.52	53.85
HORVU3Hr1G070810.3	Barley	cytosol, peroxisome	17.13	53.4
TraesCS7B01G194000.1	Wheat	cytosol	53.58	53.25
TraesCS7B01G128800.1	Wheat	cytosol	52.65	52.48
TraesCS7D01G224000.1	Wheat	unclear	52.65	52.48
Os01t0255100-01	Rice	cytosol	52.96	52.47
AT4G15955.3	Thale cress	cytosol	49.53	52.3
TraesCS7A01G222400.1	Wheat	cytosol	49.22	52.15
HORVU7Hr1G045640.2	Barley	plastid	57.01	51.99
CDY57860	Canola	cytosol	49.22	51.97
TraesCS7D01G224200.1	Wheat	golgi, unclear	56.39	51.57
TraesCS7B01G128900.1	Wheat	unclear	51.71	51.55
TraesCS7A01G222600.1	Wheat	golgi, unclear	56.07	51.14
VIT_05s0077g02000.t01	Wine grape	cytosol, mitochondrion, peroxisome	30.22	50.79
EES17023	Sorghum	extracellular, plastid, vacuole	56.39	48.4
HORVU3Hr1G070830.1	Barley	cytosol, peroxisome	25.23	46.55
AT4G15960.1	Thale cress	mitochondrion	54.21	46.4
HORVU7Hr1G045620.2	Barley	cytosol, mitochondrion, peroxisome	22.12	46.1
HORVU3Hr1G035400.1	Barley	plastid	57.01	45.19
VIT_05s0077g02030.t01	Wine grape	mitochondrion	12.46	42.55
PGSC0003DMT400057633	Potato	peroxisome	36.76	37.46
PGSC0003DMT400055784	Potato	cytosol, peroxisome, plastid	36.14	37.3
PGSC0003DMT400057630	Potato	peroxisome, plasma membrane, plastid	37.07	36.28
GSMUA_Achr3P24120_001	Banana	cytosol	56.07	28.39

Protein Annotations

EntrezGene:102577626	Gene3D:3.40.50.1820	MapMan:35.2	ProteinID:AAA81890	ProteinID:AAA81890.1	ProteinID:AAA81893
ProteinID:AAA81893.1	InterPro:AB_hydrolase	InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:IPR029058	RefSeq:NP_001275381.1	PFAM:PF12697	EnsemblPlantsGene:PGSC0003DMG402023438	PGSC:PGSC0003DMG402023438
EnsemblPlants:PGSC0003DMT400060254	PRINTS:PR00412	PANTHER:PTHR43329	PANTHER:PTHR43329:SF13	UniProt:Q41413	MEROPS:S33.971
SUPFAM:SSF53474	EMBL:U02495	EMBL:U02498	UniParc:UPI00000ACB07	SEG:seg	:

Description

Epoxide hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG402023438]

Coordinates

chr5:-:50053867..50056313

Molecular Weight (calculated)

36379.7 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.112

Length

321 amino acids

Sequence
(BLAST)

001: MEKIEHKMVA VNGLNMHIAE LGQGPTILFI HGFPELWYSW RHQMVYLAER GYRAVAPDLR GYGDTTGAPI NDPSKFSIFH LVGDVVALLE AIAPNEDKVF
101: VVAHDWGALI AWHLCLFRPD KVKALVNLSV HYHPRNSNMN PIEGLKALYG EDYYICRFQV PGEIEAEFAP IGAKSVLKKM LTYRDPAPFY FPKGKGLEAI
201: ADAPIVLSTW LSEEELDYYA NKFEQTGFTG ALNYYRALSI NSELTAPWTG AQVNVPTKFI VGEFDLAYHM RGAKEYIHNG GFKKYVPLLE EVVVLEGAAH
301: FVNQERPHEI SKHIYDFIQK F

Best Arabidopsis Sequence Match ( AT2G26740.1 )
(BLAST)

001: MEHRKVRGNG IDIHVAIQGP SDGPIVLLLH GFPELWYSWR HQIPGLAARG YRAVAPDLRG YGDSDAPAEI SSYTCFNIVG DLIAVISALT ASEDEKVFVV
101: GHDWGALIAW YLCLFRPDRV KALVNLSVPF SFRPTDPSVK PVDRMRAFYG DDYYICRFQE FGDVEAEIAE VGTERVMKRL LTYRTPGPVI IPKDKSFWGS
201: KGETIPLPSW LTEEDVAYFV SKFEEKGFSG PVNYYRNFNR NNELLGPWVG SKIQVPTKFV IGELDLVYYM PGVKEYIHGP QFKEDVPLLE EPVVMEGVAH
301: FINQEKPQEI LQIILDFISK F

Arabidopsis Description

ATSEHATsEH [Source:UniProtKB/TrEMBL;Acc:Q42566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.