Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28645 | Canola | nucleus | 73.53 | 80.2 |
| CDY17352 | Canola | extracellular, vacuole | 72.37 | 75.6 |
| AT5G55660.1 | Thale cress | nucleus | 55.26 | 61.44 |
| Bra035582.1-P | Field mustard | nucleus | 53.29 | 58.06 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 31.91 | 46.08 |
| Bra026415.1-P | Field mustard | nucleus | 40.69 | 42.16 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 16.76 | 41.67 |
| Solyc07g065490.2.1 | Tomato | nucleus | 29.13 | 39.75 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 30.64 | 38.8 |
| KRH46360 | Soybean | nucleus | 32.25 | 37.7 |
| KRG98507 | Soybean | nucleus | 31.1 | 36.6 |
| Solyc10g006000.2.1 | Tomato | nucleus | 23.35 | 36.46 |
| KRH46364 | Soybean | nucleus | 31.79 | 34.08 |
| KRG98502 | Soybean | nucleus | 28.32 | 33.56 |
| Bra029213.1-P | Field mustard | nucleus | 10.87 | 33.33 |
| Bra027748.1-P | Field mustard | nucleus | 6.47 | 31.82 |
| Bra019559.1-P | Field mustard | nucleus | 14.8 | 30.62 |
| EER91265 | Sorghum | nucleus | 22.77 | 30.54 |
| Zm00001d033159_P001 | Maize | nucleus | 15.49 | 29.98 |
| Zm00001d013757_P010 | Maize | nucleus | 22.31 | 29.56 |
| Bra010432.1-P | Field mustard | nucleus | 38.5 | 29.44 |
| Bra038644.1-P | Field mustard | nucleus | 16.65 | 29.39 |
| Os03t0596900-01 | Rice | nucleus | 23.01 | 28.31 |
| Bra035837.1-P | Field mustard | nucleus | 17.23 | 27.14 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 23.12 | 20.58 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 23.12 | 20.18 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 22.89 | 19.76 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 22.31 | 19.73 |
| OQU91413 | Sorghum | nucleus | 20.23 | 12.95 |
Protein Annotations
| EnsemblPlants:Bra002880.1 | EnsemblPlants:Bra002880.1-P | EnsemblPlantsGene:Bra002880 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | PFAM:PF08766 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF109715 |
| UniParc:UPI0002544666 | UniProt:M4CF98 | MapMan:35.2 | : | : | : |
Description
AT5G55660 (E=4e-161) | LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26630.2); Has 348612 Blast hits to 121147 proteins in 2910 species: Archae - 1231; Bacteria - 38190; Metazoa - 148268; Fungi - 42547; Plants - 15024; Viruses - 2447; Other Eukaryotes - 100905 (source: NCBI BLink).
Coordinates
chrA10:+:6998208..7002504
Molecular Weight (calculated)
96800.5 Da
IEP (calculated)
4.510
GRAVY (calculated)
-1.405
Length
865 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLKSGFASV LVFVLIRTKV ESLETGEAPL WIASEVRFQS LLLFAEPASF QHCVSFSCGL ILLKSRLGLF VKFCIGDLLN TEITMGEEDT KVIVEPTANG
101: TSSLPKPSDE ITGKQAEENA TVKETQENKK AEDNGSEKME IDDDIKQDEE KEKEVEVSDK ETKAETEKDV NGDKEPAETA ETNEDKGQPE ADQMDEDTDG
201: KKLEADDGVS GGATAEDTVM KETVESDDKR ETDTKGAENQ VVNKIDTTEG SQDKTEKESE EEKLVGGDEG DSVDEVEKRD TRNKEEAPKK RNEGEMAEDG
301: KEEKPNKEEE VKEANKEEED TDVNEPKEDD EKIEAKGEDG NDIDDSKDEI EDKEEETKDE KEDEKEESND DKEDEKEKNN DDKEDENEDS KKSSKRGKGK
401: NEKARGKTKS EEEKKDAEPE TPYSDRPVRE RKSVERLVAV IDKDSSKEFQ VEKGKGTPLK DIPNVAYKIA RKKSEEVFKL LHTILFGGRR GRAAQVKANI
501: LRFSGYKWQG DEEKAKDKIK EKLDKCNKEK LLEFCDLFDI SVAKATTKKE DIVAKLFKFL EKPHATTDVP VYEKEKGAKR KRTPTKSSHA AGSSSSKRSA
601: KSQKKTDKKS LPHSDDESEE EKEEEEEERE HETEEEDEKI DEEEENENGI PDQSDDEAPQ PSESEEKVES EEDSESEEET KKKKRGSRTV SGKKESTAGK
701: SRSKKAAVST KSSPPPKKVT QKRSAGKRKK SDDDDSDTSP KASSSKRKKT EKPAKEQSSV PSKSASKEKP GKRGGKGKDK TKEPSDEELK NAIVDILKEV
801: DFNTATFTDI LNRLAGMFKL DLTSRKSSIK LMIQDELTKL ADEAENEVGE EDAEKEKAGG EEVKA
101: TSSLPKPSDE ITGKQAEENA TVKETQENKK AEDNGSEKME IDDDIKQDEE KEKEVEVSDK ETKAETEKDV NGDKEPAETA ETNEDKGQPE ADQMDEDTDG
201: KKLEADDGVS GGATAEDTVM KETVESDDKR ETDTKGAENQ VVNKIDTTEG SQDKTEKESE EEKLVGGDEG DSVDEVEKRD TRNKEEAPKK RNEGEMAEDG
301: KEEKPNKEEE VKEANKEEED TDVNEPKEDD EKIEAKGEDG NDIDDSKDEI EDKEEETKDE KEDEKEESND DKEDEKEKNN DDKEDENEDS KKSSKRGKGK
401: NEKARGKTKS EEEKKDAEPE TPYSDRPVRE RKSVERLVAV IDKDSSKEFQ VEKGKGTPLK DIPNVAYKIA RKKSEEVFKL LHTILFGGRR GRAAQVKANI
501: LRFSGYKWQG DEEKAKDKIK EKLDKCNKEK LLEFCDLFDI SVAKATTKKE DIVAKLFKFL EKPHATTDVP VYEKEKGAKR KRTPTKSSHA AGSSSSKRSA
601: KSQKKTDKKS LPHSDDESEE EKEEEEEERE HETEEEDEKI DEEEENENGI PDQSDDEAPQ PSESEEKVES EEDSESEEET KKKKRGSRTV SGKKESTAGK
701: SRSKKAAVST KSSPPPKKVT QKRSAGKRKK SDDDDSDTSP KASSSKRKKT EKPAKEQSSV PSKSASKEKP GKRGGKGKDK TKEPSDEELK NAIVDILKEV
801: DFNTATFTDI LNRLAGMFKL DLTSRKSSIK LMIQDELTKL ADEAENEVGE EDAEKEKAGG EEVKA
001: MGEEDTKVIV EPTANGTSSL QKTSDAISGK EVQENASGKE VQESKKEEDT GLEKMEIDDE GKQHEGESET GDKEVEVTEE EKKDVGEDKE QPEADKMDED
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
101: TDDKNLKADD GVSGVATEED AVMKESVESA DNKDAENPEG EQEKESKEEK LEGGKANGNE EGDTEEKLVG GDKGDDVDEA EKVENVDEDD KEEALKEKNE
201: AELAEEEETN KGEEVKEANK EDDVEADTKV AEPEVEDKKT ESKDENEDKE EEKEDEKEES MDDKEDEKEE SNDDDKEDEK EESNDDKEDK KEDIKKSNKR
301: GKGKTEKTRG KTKSDEEKKD IEPKTPFFSD RPVRERKSVE RLVAVVDKDS SREFHVEKGK GTPLKDIPNV AYKVSRKKSD EVFKQLHTIL FGGKRVKATQ
401: LKAHILRFSG YKWQGDEEKA KLKVKEKFEK INKEKLLEFC DLFDISVAKA TTKKEDIVTK LVEFLEKPHA TTDVLVNEKE KGVKRKRTPK KSSPAAGSSS
501: SKRSAKSQKK TEEATRTNKK SVAHSDDESE EEKEDDEEEE KEQEVEEEEE ENENGIPDKS EDEAPQLSES EENVESEEES EEETKKKKRG SRTSSDKKES
601: AGKSRSKKTA VPTKSSPPKK ATQKRSAGKR KKSDDDSDTS PKASSKRKKT EKPAKEQAAA PLKSVSKEKP VIGKRGGKGK DKNKEPSDEE LKTAIIDILK
701: GVDFNTATFT DILKRLDAKF NISLASKKSS IKRMIQDELT KLADEAEDEE GEEEDAEHEE EEEKEKAKGS GGGEEVKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:F4K4Y5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.