Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 76.5 | 71.01 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 44.8 | 47.41 |
| Solyc10g006000.2.1 | Tomato | nucleus | 39.27 | 44.95 |
| CDX94304 | Canola | nucleus | 29.02 | 42.11 |
| KRH46360 | Soybean | nucleus | 43.69 | 37.43 |
| KRG98507 | Soybean | nucleus | 42.59 | 36.73 |
| CDY06563 | Canola | nucleus | 39.43 | 36.39 |
| Solyc03g097490.2.1 | Tomato | nucleus | 29.5 | 34.76 |
| Solyc06g072660.2.1 | Tomato | nucleus | 27.92 | 33.71 |
| KRH46364 | Soybean | nucleus | 42.9 | 33.71 |
| KRG98502 | Soybean | nucleus | 38.64 | 33.56 |
| AT5G55660.1 | Thale cress | nucleus | 39.91 | 32.52 |
| AT4G26630.1 | Thale cress | nucleus | 38.8 | 32.24 |
| Bra035582.1-P | Field mustard | nucleus | 40.06 | 31.99 |
| CDX89318 | Canola | nucleus | 35.02 | 31.53 |
| CDY28645 | Canola | nucleus | 39.43 | 31.53 |
| CDY20754 | Canola | nucleus | 38.8 | 30.98 |
| CDY17352 | Canola | extracellular, vacuole | 40.06 | 30.68 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 15.14 | 29.91 |
| Bra026415.1-P | Field mustard | nucleus | 38.96 | 29.58 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 39.75 | 29.13 |
| EER91265 | Sorghum | nucleus | 28.39 | 27.91 |
| Zm00001d013757_P010 | Maize | nucleus | 28.71 | 27.87 |
| Zm00001d033159_P001 | Maize | nucleus | 19.24 | 27.29 |
| Os03t0596900-01 | Rice | nucleus | 29.81 | 26.88 |
| Bra010432.1-P | Field mustard | nucleus | 37.22 | 20.87 |
| CDX97358 | Canola | nucleus | 38.33 | 20.03 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 26.34 | 17.18 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 26.34 | 16.85 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 25.87 | 16.77 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 26.5 | 16.77 |
| OQU91413 | Sorghum | nucleus | 26.5 | 12.44 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.2 | ncoils:Coil | InterPro:DEK_C | GO:GO:0003674 | GO:GO:0003682 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006338 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 | GO:GO:2000779 | UniProt:K4CHM7 | PFAM:PF08766 |
| PANTHER:PTHR13468 | PANTHER:PTHR13468:SF8 | SUPFAM:SSF109715 | EnsemblPlantsGene:Solyc07g065490.2 | EnsemblPlants:Solyc07g065490.2.1 | UniParc:UPI000276AC59 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:+:67222417..67229729
Molecular Weight (calculated)
72280.3 Da
IEP (calculated)
4.877
GRAVY (calculated)
-1.635
Length
634 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIDKEEAKE TKGEEEVKEN IEKEEVAKED NEKEEEAKEN NGKGEEVKET NETKEEEKPD QEIEVEEEKP QTKSEAMEEE PDNKDVEEEM AEEQDNKDEE
101: MAEEPDNKDD DEEMAEEPEN KDEEVREEGE KDDNKTNEKH KDKEGSKKSV KSKGQKDNKR KREVAPKKEK EPKTPAPPTI DRPVRERKSV ERLVASIDRE
201: ANKEFRIEKG RGTALKDIPN VAYKLSKKKT EDTFKLLHTI LYGRRGKAAQ IKSNISRFSG FVWHENEEKQ KMKVKEKFDK YIKEKLLEFC DVLDIPVTKA
301: TSRKEDMVVK LMDFLEAPHA TTSELLAEKD QSSRGKKRRR ESKKSPSSAS ASSKGSTKSG KKAETAQKAE KKKKVQESED ESEQEEDVHE ESEEEKTNGV
401: PERSDDEKSD QAESEKESES EDEPEPEPEP EPEQEPEPEP EPEPEPKEDK KKHKQSSSKS STKKEPAVKA KTKKPAVSKV PSPPKKTPSK SSKSSKHIAN
501: DDATPKASSK KKKTEVVKEK SSTPKKSTPR ENTGKKIVKG KDKSKEDKLR PSDDELRNAI CEILKEVDFN TATFTDILKQ LAKRFDTDLM PRKSSIKIMI
601: QDELTKLADE EDDEEDEGEA LKDAKKPSTK AVKA
101: MAEEPDNKDD DEEMAEEPEN KDEEVREEGE KDDNKTNEKH KDKEGSKKSV KSKGQKDNKR KREVAPKKEK EPKTPAPPTI DRPVRERKSV ERLVASIDRE
201: ANKEFRIEKG RGTALKDIPN VAYKLSKKKT EDTFKLLHTI LYGRRGKAAQ IKSNISRFSG FVWHENEEKQ KMKVKEKFDK YIKEKLLEFC DVLDIPVTKA
301: TSRKEDMVVK LMDFLEAPHA TTSELLAEKD QSSRGKKRRR ESKKSPSSAS ASSKGSTKSG KKAETAQKAE KKKKVQESED ESEQEEDVHE ESEEEKTNGV
401: PERSDDEKSD QAESEKESES EDEPEPEPEP EPEQEPEPEP EPEPEPKEDK KKHKQSSSKS STKKEPAVKA KTKKPAVSKV PSPPKKTPSK SSKSSKHIAN
501: DDATPKASSK KKKTEVVKEK SSTPKKSTPR ENTGKKIVKG KDKSKEDKLR PSDDELRNAI CEILKEVDFN TATFTDILKQ LAKRFDTDLM PRKSSIKIMI
601: QDELTKLADE EDDEEDEGEA LKDAKKPSTK AVKA
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
Arabidopsis Description
DEK domain-containing chromatin associated protein [Source:UniProtKB/TrEMBL;Acc:Q9SUA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.