Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037720 | Potato | nucleus | 94.42 | 94.42 |
| Solyc05g009170.1.1 | Tomato | nucleus | 75.81 | 76.89 |
| VIT_01s0011g03780.t01 | Wine grape | nucleus | 72.09 | 70.14 |
| AT1G68360.1 | Thale cress | nucleus | 54.42 | 47.95 |
| VIT_14s0006g02730.t01 | Wine grape | cytosol, mitochondrion, nucleus | 46.51 | 47.62 |
| CDY01910 | Canola | nucleus | 52.09 | 47.06 |
| CDX96028 | Canola | nucleus | 51.63 | 47.03 |
| Bra004300.1-P | Field mustard | nucleus | 50.7 | 46.19 |
| CDX81505 | Canola | nucleus | 49.77 | 46.12 |
| CDY67985 | Canola | nucleus | 50.23 | 45.96 |
| KRH01734 | Soybean | nucleus | 38.14 | 45.81 |
| KRH46944 | Soybean | nucleus | 36.28 | 45.35 |
| Bra033944.1-P | Field mustard | nucleus | 47.91 | 44.4 |
| AT1G67030.1 | Thale cress | nucleus | 39.07 | 42.64 |
| Bra004200.1-P | Field mustard | nucleus | 34.88 | 39.27 |
| CDX96114 | Canola | nucleus | 34.88 | 39.27 |
| CDY01779 | Canola | nucleus | 35.35 | 38.78 |
| Solyc01g060420.2.1 | Tomato | nucleus | 23.26 | 32.47 |
| Solyc05g006310.1.1 | Tomato | nucleus | 27.91 | 24.0 |
| Solyc10g078970.1.1 | Tomato | nucleus | 22.33 | 23.41 |
| Solyc10g080600.1.1 | Tomato | nucleus | 24.19 | 22.22 |
| Solyc03g058160.2.1 | Tomato | nucleus | 21.86 | 21.36 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 21.4 | 19.83 |
| Solyc03g113890.1.1 | Tomato | nucleus | 20.47 | 19.13 |
Protein Annotations
| EnsemblPlants:Solyc05g009180.1.1 | EnsemblPlantsGene:Solyc05g009180.1 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF237 | PFscan:PS50157 | ScanProsite:PS00028 | SUPFAM:SSF57667 |
| UniParc:UPI0002766896 | UniProt:K4BX92 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr5:-:3315685..3316332
Molecular Weight (calculated)
23276.1 Da
IEP (calculated)
8.012
GRAVY (calculated)
-0.593
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELEFQGKH NNNRTSNGRL KLFGFNVTED QEQEVESTKT SSGSPESGDF LASDGRKYEC QYCCREFANS QALGGHQNAH KKERQQLKRA QMQASRNAYM
101: RNPIISAFAP PSHLLAPSGS VMVPTTSPSW VYVPRPAPPF HVSHGCVFPN SSGARGVGNL QYTGSVAESS LTSVGPQQVK AHSAKVDGPS LSRFSSMDAG
201: PNFDDAFGLD LHLSL
101: RNPIISAFAP PSHLLAPSGS VMVPTTSPSW VYVPRPAPPF HVSHGCVFPN SSGARGVGNL QYTGSVAESS LTSVGPQQVK AHSAKVDGPS LSRFSSMDAG
201: PNFDDAFGLD LHLSL
001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
Arabidopsis Description
GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.