Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004200.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY01779 | Canola | nucleus | 92.67 | 90.31 |
| AT1G67030.1 | Thale cress | nucleus | 79.58 | 77.16 |
| VIT_14s0006g02730.t01 | Wine grape | cytosol, mitochondrion, nucleus | 42.93 | 39.05 |
| Solyc05g009170.1.1 | Tomato | nucleus | 40.84 | 36.79 |
| PGSC0003DMT400037771 | Potato | nucleus | 40.84 | 36.79 |
| Solyc05g009180.1.1 | Tomato | nucleus | 39.27 | 34.88 |
| PGSC0003DMT400037720 | Potato | nucleus | 39.27 | 34.88 |
| CDY01910 | Canola | nucleus | 39.27 | 31.51 |
| CDX96028 | Canola | nucleus | 38.74 | 31.36 |
| CDY67985 | Canola | nucleus | 38.22 | 31.06 |
| CDX81505 | Canola | nucleus | 37.7 | 31.03 |
| CDY34889 | Canola | nucleus | 23.04 | 21.78 |
| CDY67406 | Canola | nucleus | 22.51 | 20.87 |
| CDY20951 | Canola | nucleus | 21.47 | 20.0 |
| CDY20629 | Canola | nucleus | 21.47 | 19.9 |
| CDY35394 | Canola | nucleus | 24.08 | 18.55 |
| CDY04997 | Canola | nucleus | 17.28 | 18.44 |
| CDY14074 | Canola | nucleus | 17.28 | 18.33 |
| CDY56241 | Canola | nucleus | 21.47 | 18.3 |
| CDY22545 | Canola | nucleus | 23.56 | 17.93 |
| CDY57240 | Canola | nucleus | 21.99 | 17.57 |
| CDY06892 | Canola | nucleus | 23.04 | 17.32 |
| CDX79901 | Canola | nucleus | 22.51 | 17.2 |
| CDY14805 | Canola | nucleus | 22.51 | 16.8 |
| CDX71975 | Canola | nucleus | 21.47 | 16.27 |
| CDY06054 | Canola | nucleus | 21.47 | 16.21 |
| CDY64571 | Canola | nucleus | 21.47 | 13.02 |
Protein Annotations
| EnsemblPlants:CDX96114 | EnsemblPlantsGene:GSBRNA2T00102163001 | Gene3D:3.30.160.60 | GO:A0A078E644 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF243 |
| PFscan:PS50157 | ProteinID:CDX96114 | ProteinID:CDX96114.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0002541579 | MapMan:15.5.15 | : | : | : | : |
Description
BnaA07g26170D
Coordinates
chrLK031892:-:1123514..1124089
Molecular Weight (calculated)
21263.2 Da
IEP (calculated)
7.717
GRAVY (calculated)
-0.761
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDTSSLKL FGINLLETTS DPDQSPEPRS EPEPESRKYE CQYCCREFAN SQALGGHQNA HKKERQLLKR AQMLAARGLP RHNNYHPHMN PLLSAFSPPH
101: MMLSPSSSTS KWLYGEHMHV SSQKAAGPMY FYGGSERRGF YGGGMETMAG EVRAHGGSLP EMRRFTGEND RITEVKLDNG IGLDLHLSLG P
101: MMLSPSSSTS KWLYGEHMHV SSQKAAGPMY FYGGSERRGF YGGGMETMAG EVRAHGGSLP EMRRFTGEND RITEVKLDNG IGLDLHLSLG P
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
Arabidopsis Description
ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.