Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04997 | Canola | nucleus | 96.67 | 97.21 |
| Bra028724.1-P | Field mustard | nucleus | 94.44 | 93.41 |
| AT5G06650.1 | Thale cress | nucleus | 75.56 | 71.2 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 19.44 | 32.11 |
| CDY56241 | Canola | nucleus | 36.11 | 29.02 |
| CDY57240 | Canola | nucleus | 38.33 | 28.87 |
| CDX71975 | Canola | nucleus | 40.0 | 28.57 |
| CDY35394 | Canola | nucleus | 38.89 | 28.23 |
| CDY06054 | Canola | nucleus | 39.44 | 28.06 |
| CDY22545 | Canola | nucleus | 38.33 | 27.49 |
| CDX79901 | Canola | nucleus | 37.22 | 26.8 |
| CDY06892 | Canola | nucleus | 37.78 | 26.77 |
| CDY14805 | Canola | nucleus | 37.78 | 26.56 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 30.0 | 24.55 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 33.89 | 24.02 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 21.67 | 22.54 |
| Zm00001d018247_P001 | Maize | nucleus | 35.56 | 22.54 |
| Os02t0775600-01 | Rice | nucleus | 34.44 | 22.22 |
| Zm00001d044980_P001 | Maize | nucleus | 29.44 | 21.37 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 33.33 | 20.98 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 27.78 | 20.83 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 32.78 | 20.77 |
| Zm00001d037136_P001 | Maize | nucleus | 30.56 | 20.68 |
| Zm00001d052118_P001 | Maize | nucleus | 35.0 | 20.59 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 32.22 | 20.57 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 27.22 | 20.42 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 32.22 | 20.35 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 27.22 | 20.33 |
| CDY64571 | Canola | nucleus | 35.56 | 20.32 |
| EES07621 | Sorghum | nucleus | 34.44 | 20.13 |
| OQU76029 | Sorghum | plastid | 31.11 | 19.11 |
| CDY20951 | Canola | nucleus | 21.11 | 18.54 |
| CDY20629 | Canola | nucleus | 21.11 | 18.45 |
| CDY67406 | Canola | nucleus | 20.56 | 17.96 |
| CDY34889 | Canola | nucleus | 20.0 | 17.82 |
| CDX96114 | Canola | nucleus | 18.33 | 17.28 |
| CDX96028 | Canola | nucleus | 22.22 | 16.95 |
| CDX81505 | Canola | nucleus | 21.67 | 16.81 |
| CDY01910 | Canola | nucleus | 22.22 | 16.81 |
| CDY67985 | Canola | nucleus | 21.67 | 16.6 |
| CDY01779 | Canola | nucleus | 17.78 | 16.33 |
| HORVU7Hr1G034940.1 | Barley | plastid | 6.11 | 8.8 |
Protein Annotations
| EnsemblPlants:CDY14074 | EnsemblPlantsGene:GSBRNA2T00078609001 | Gene3D:3.30.160.60 | GO:A0A078FMI8 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY14074 | ProteinID:CDY14074.1 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF57667 | UniParc:UPI0004EDC3AF | UniProt:A0A078FMI8 | MapMan:15.5.15 | : | : |
Description
BnaC02g01910DBnaC02g01910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMI8]
Coordinates
chrLK032040:-:299244..299786
Molecular Weight (calculated)
20937.0 Da
IEP (calculated)
9.657
GRAVY (calculated)
-1.079
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTHDFMNVE SFSPKVRPIR LFGFEFGTSH EESESSESIN EVNNTTNNNK DKRFNCHYCS RKFPTSQALG GHQNAHKRER QQTKRFHLHS NAAAFFHRNQ
101: YHFAASRFFE DHFSLEAARI NDARLGLLRR YNSSKSCDDH DRTSYQSRPT YGGGGGKSRH DLFYESKTNV TDHVSLDLRL
101: YHFAASRFFE DHFSLEAARI NDARLGLLRR YNSSKSCDDH DRTSYQSRPT YGGGGGKSRH DLFYESKTNV TDHVSLDLRL
001: MKTYDFMNVN SFSPKERPIR LFGFEFGASH EESESKDNYN ENNESIKDDN KEKRFKCHYC FRNFPTSQAL GGHQNAHKRE RQQTKRFNLH SNAAAFFHRQ
101: QNHIAASRLY EDRYSLEAVQ INDARLGLCR MYNSSASFNR DRSSYYNRYI PWFIGDHQTR PTYVGGGSSS HGLFYESKKN VPDHVSLDLR L
101: QNHIAASRLY EDRYSLEAVQ INDARLGLCR MYNSSASFNR DRSSYYNRYI PWFIGDHQTR PTYVGGGSSS HGLFYESKKN VPDHVSLDLR L
Arabidopsis Description
GIS2Zinc finger protein GIS2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG05]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.