Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07621 | Sorghum | nucleus | 82.35 | 81.82 |
| Zm00001d018247_P001 | Maize | nucleus | 73.86 | 79.58 |
| Os02t0775600-01 | Rice | nucleus | 66.01 | 72.4 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 62.75 | 67.37 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 62.09 | 66.43 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 61.44 | 66.2 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 60.78 | 65.96 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 36.27 | 46.64 |
| Zm00001d044980_P001 | Maize | nucleus | 36.93 | 45.56 |
| Zm00001d037136_P001 | Maize | nucleus | 37.58 | 43.23 |
| PGSC0003DMT400013992 | Potato | nucleus | 32.35 | 42.86 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 34.97 | 42.13 |
| Solyc03g058160.2.1 | Tomato | nucleus | 28.76 | 40.0 |
| KRH67106 | Soybean | nucleus | 33.01 | 39.0 |
| GSMUA_Achr10P... | Banana | nucleus | 34.64 | 38.97 |
| Zm00001d020653_P001 | Maize | nucleus | 37.25 | 38.91 |
| KRG95435 | Soybean | nucleus | 32.03 | 38.43 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 27.45 | 38.18 |
| CDY57240 | Canola | nucleus | 29.74 | 38.08 |
| Zm00001d005837_P001 | Maize | nucleus | 35.95 | 38.06 |
| Bra003317.1-P | Field mustard | nucleus | 29.09 | 37.71 |
| CDY35394 | Canola | nucleus | 29.74 | 36.69 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 33.01 | 36.59 |
| CDX79901 | Canola | nucleus | 29.74 | 36.4 |
| Zm00001d050111_P001 | Maize | nucleus | 37.25 | 36.31 |
| Bra000245.1-P | Field mustard | nucleus | 29.41 | 36.29 |
| CDY22545 | Canola | nucleus | 29.74 | 36.26 |
| Solyc10g078970.1.1 | Tomato | nucleus | 23.86 | 35.61 |
| Bra004660.1-P | Field mustard | nucleus | 29.09 | 35.6 |
| Solyc10g080600.1.1 | Tomato | nucleus | 27.12 | 35.47 |
| CDY06892 | Canola | nucleus | 29.41 | 35.43 |
| Bra016900.1-P | Field mustard | nucleus | 29.41 | 35.43 |
| PGSC0003DMT400060839 | Potato | nucleus | 27.45 | 35.29 |
| Bra028724.1-P | Field mustard | nucleus | 20.91 | 35.16 |
| AT2G41940.1 | Thale cress | nucleus | 29.41 | 35.02 |
| CDY14074 | Canola | nucleus | 20.59 | 35.0 |
| CDY14805 | Canola | nucleus | 29.09 | 34.77 |
| CDY04997 | Canola | nucleus | 20.26 | 34.64 |
| KRH38054 | Soybean | nucleus | 34.64 | 34.53 |
| CDY56241 | Canola | nucleus | 25.16 | 34.38 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 25.82 | 34.05 |
| Zm00001d028222_P001 | Maize | nucleus | 35.29 | 33.86 |
| CDX71975 | Canola | nucleus | 27.78 | 33.73 |
| PGSC0003DMT400029797 | Potato | nucleus | 28.1 | 33.33 |
| CDY06054 | Canola | nucleus | 27.45 | 33.2 |
| Bra007378.1-P | Field mustard | nucleus | 27.45 | 33.2 |
| AT5G06650.1 | Thale cress | nucleus | 20.59 | 32.98 |
| AT3G58070.1 | Thale cress | nucleus | 27.12 | 32.81 |
| CDY64571 | Canola | nucleus | 28.1 | 27.3 |
| Zm00001d045738_P001 | Maize | nucleus | 16.67 | 22.87 |
| Zm00001d008562_P001 | Maize | nucleus | 18.63 | 21.19 |
| Zm00001d039977_P001 | Maize | nucleus | 18.3 | 20.97 |
Protein Annotations
| EnsemblPlants:Zm00001d052118_P001 | EnsemblPlants:Zm00001d052118_T001 | EnsemblPlantsGene:Zm00001d052118 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF238 | PFscan:PS50157 |
| ProteinID:AQK56269.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002212082 | UniProt:K7U9P4 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Zinc finger protein
Coordinates
chr4:+:180301898..180302818
Molecular Weight (calculated)
32292.7 Da
IEP (calculated)
9.267
GRAVY (calculated)
-0.728
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKPQEVRSV DSFSQLPFIR PAPPPAPAQP RDATIRLFGC DFSNDDQQQR QAKQQQQHRQ DAGAAADSPD AANGSSITSE SNNGANKSGG ADRKFECHYC
101: CRNFPTSQAL GGHQNAHKRE RQHAKRAHLQ ASLAMHRYVP GHMYGLFNYH QQQQHHLGGG GGGRFDYPAP LQLPPPPPAR YPMWTSAGPA GPYGGGPGSM
201: SQPINGSPVP PGLWRVPPPA ATTTTTTAME NFGVPGRRHG AGGGTAAVLA AGPAGAEAAA CKDDAMGLLS PSPSLSSCSS TSPEKKKLGR CELGRQKETV
301: SLDLHL
101: CRNFPTSQAL GGHQNAHKRE RQHAKRAHLQ ASLAMHRYVP GHMYGLFNYH QQQQHHLGGG GGGRFDYPAP LQLPPPPPAR YPMWTSAGPA GPYGGGPGSM
201: SQPINGSPVP PGLWRVPPPA ATTTTTTAME NFGVPGRRHG AGGGTAAVLA AGPAGAEAAA CKDDAMGLLS PSPSLSSCSS TSPEKKKLGR CELGRQKETV
301: SLDLHL
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
Arabidopsis Description
ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.