Factsheet for PGSC0003DMT400060839

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080600.1.1	Tomato	nucleus	91.18	92.73
PGSC0003DMT400013992	Potato	nucleus	44.12	45.45
HORVU7Hr1G034930.2	Barley	nucleus	18.91	41.28
PGSC0003DMT400029797	Potato	nucleus	34.45	31.78
GSMUA_Achr10P...	Banana	nucleus	35.71	31.25
Zm00001d018247_P001	Maize	nucleus	36.97	30.99
TraesCS6B01G365700.1	Wheat	nucleus	35.71	29.72
HORVU6Hr1G080870.1	Barley	nucleus	35.29	29.58
Os02t0775600-01	Rice	nucleus	34.45	29.39
TraesCS6D01G314600.1	Wheat	nucleus	34.87	29.12
TraesCS6A01G335100.1	Wheat	nucleus	34.45	29.08
Zm00001d044980_P001	Maize	nucleus	30.25	29.03
GSMUA_Achr3P02080_001	Banana	nucleus	33.61	28.99
OQU80598	Sorghum	mitochondrion, nucleus, plastid	21.01	28.9
EES07621	Sorghum	nucleus	35.71	27.6
TraesCS7B01G071600.1	Wheat	nucleus	27.73	27.5
Zm00001d052118_P001	Maize	nucleus	35.29	27.45
Zm00001d037136_P001	Maize	nucleus	30.25	27.07
TraesCS7D01G167600.1	Wheat	nucleus	26.89	26.67
TraesCS7A01G167000.1	Wheat	nucleus	26.47	26.14
PGSC0003DMT400037720	Potato	nucleus	22.27	24.65
PGSC0003DMT400037771	Potato	nucleus	21.43	24.06
OQU76029	Sorghum	plastid	29.41	23.89
PGSC0003DMT400038786	Potato	cytosol, mitochondrion, nucleus	12.61	23.44
PGSC0003DMT400040327	Potato	nucleus	19.33	18.55
HORVU7Hr1G034940.1	Barley	plastid	7.98	15.2
PGSC0003DMT400062866	Potato	nucleus	11.76	12.17

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
UniProt:M1C6I5	PFAM:PF13912	EnsemblPlantsGene:PGSC0003DMG400023666	PGSC:PGSC0003DMG400023666	EnsemblPlants:PGSC0003DMT400060839	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	SUPFAM:SSF57667	UniParc:UPI000294BB94	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023666]

Coordinates

chr10:+:57399358..57400223

Molecular Weight (calculated)

27213.2 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.951

Length

238 amino acids

Sequence
(BLAST)

001: MERTKDRETQ DFMNVESFSQ LPFMRPTKEK GAIRLFGKEL LGTTIRHEDQ SNDIHDSIGE TADTNNNRKF ECQYCCRNFP TSQALGGHQN AHKRERQHAK
101: RAQYAKYQYN AYFNSALYNT SSTSSTTSGG FYGSHVNNNG HSHYYSQQIN RDINENHRSF AALWRVPHVH HSSISSSSSN SYSPNNVSNF VRPVVYNNVN
201: GDLKKINTKS SSISVTRFGY ELKEGVLHQD HVSLDLHL

Best Arabidopsis Sequence Match ( AT3G58070.1 )
(BLAST)

001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL

Arabidopsis Description

GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.