Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g060420.2.1 | Tomato | nucleus | 85.16 | 70.78 |
| VIT_05s0077g01390.t01 | Wine grape | nucleus | 53.91 | 33.33 |
| KRH68238 | Soybean | nucleus | 32.03 | 24.7 |
| KRG96499 | Soybean | nucleus | 31.25 | 20.62 |
| PGSC0003DMT400037771 | Potato | nucleus | 31.25 | 18.87 |
| PGSC0003DMT400037720 | Potato | nucleus | 31.25 | 18.6 |
| PGSC0003DMT400013992 | Potato | nucleus | 25.78 | 14.29 |
| PGSC0003DMT400040327 | Potato | nucleus | 25.0 | 12.9 |
| PGSC0003DMT400029797 | Potato | nucleus | 25.78 | 12.79 |
| PGSC0003DMT400060839 | Potato | nucleus | 23.44 | 12.61 |
| PGSC0003DMT400062866 | Potato | nucleus | 18.75 | 10.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400038786 | EnsemblPlantsGene:PGSC0003DMG400014990 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 | PFscan:PS50157 |
| PGSC:PGSC0003DMG400014990 | ScanProsite:PS00028 | SUPFAM:SSF57667 | UniParc:UPI0002954138 | UniProt:M1B7D1 | MapMan:15.5.15 |
Description
Zinc finger protein 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400014990]
Coordinates
chr1:+:44258740..44259405
Molecular Weight (calculated)
14836.8 Da
IEP (calculated)
11.121
GRAVY (calculated)
-0.780
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPPPPLPSE DKRFECQFCH REFANSQALG GHQNAHKKER QRARRAHFIG YQQRFRPVVP LINAHAVRTG ALINNNVSMS RYRSQTLSGV PLRYQIHFRQ
101: QQHIMAVQNQ DLNGPEIDLH LRLAPPKD
101: QQHIMAVQNQ DLNGPEIDLH LRLAPPKD
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
Arabidopsis Description
ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.