CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96499	Soybean	nucleus	79.52	68.04
PGSC0003DMT400038786	Potato	cytosol, mitochondrion, nucleus	24.7	32.03
Solyc01g060420.2.1	Tomato	nucleus	29.52	31.82
VIT_05s0077g01390.t01	Wine grape	nucleus	38.55	30.92
KRH01734	Soybean	nucleus	28.31	26.26
KRH46944	Soybean	nucleus	27.11	26.16
KRH37026	Soybean	nucleus	19.88	22.76
KRH11994	Soybean	nucleus	22.89	20.54
KRG90856	Soybean	nucleus	30.72	18.15
KRH35924	Soybean	nucleus	30.72	18.02
KRH74690	Soybean	nucleus	23.49	16.18
KRH69467	Soybean	nucleus	23.49	15.85
KRG95435	Soybean	nucleus	23.49	15.29
KRH67106	Soybean	nucleus	22.89	14.67
KRH38054	Soybean	nucleus	22.29	12.05

Protein Annotations

EntrezGene:100799174	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02002104	EMBL:BT093208	UniProt:C6T6Z1
EnsemblPlantsGene:GLYMA_03G217900	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	EnsemblPlants:KRH68238	ProteinID:KRH68238	ProteinID:KRH68238.1
PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	SUPFAM:SSF57667
UniParc:UPI0001B16365	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:42170509..42171141

Molecular Weight (calculated)

18990.5 Da

IEP (calculated)

10.597

GRAVY (calculated)

-0.666

Length

166 amino acids

Sequence
(BLAST)

001: MSDETWPPKL FGFPLTEQED RKFRCHYCKR VFGNSQALGG HQNAHKKERQ RARRFQIHTH RRAIAAAASI SSHAIITSVP SIYLRGHPPT PTSLLPIFDP
101: HRQPNNTKHF PSRPTFIPSS SNYHLTNYTQ CFPFRLYASP THVLQSSTPK VPHFSAEGEV DVHLKL

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.