Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g058160.2.1 | Tomato | nucleus | 74.03 | 77.73 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 55.41 | 53.78 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 21.64 | 45.87 |
| PGSC0003DMT400060839 | Potato | nucleus | 45.45 | 44.12 |
| KRH67106 | Soybean | nucleus | 48.48 | 43.24 |
| KRG95435 | Soybean | nucleus | 47.62 | 43.14 |
| Bra004660.1-P | Field mustard | nucleus | 45.45 | 42.0 |
| CDY57240 | Canola | nucleus | 43.29 | 41.84 |
| CDX79901 | Canola | nucleus | 45.02 | 41.6 |
| KRH38054 | Soybean | nucleus | 54.98 | 41.37 |
| CDY06054 | Canola | nucleus | 45.02 | 41.11 |
| Bra007378.1-P | Field mustard | nucleus | 45.02 | 41.11 |
| CDY14805 | Canola | nucleus | 45.45 | 41.02 |
| CDX71975 | Canola | nucleus | 44.59 | 40.87 |
| CDY35394 | Canola | nucleus | 43.72 | 40.73 |
| CDY56241 | Canola | nucleus | 39.39 | 40.62 |
| Bra016900.1-P | Field mustard | nucleus | 44.59 | 40.55 |
| CDY06892 | Canola | nucleus | 44.59 | 40.55 |
| Bra000245.1-P | Field mustard | nucleus | 43.29 | 40.32 |
| PGSC0003DMT400029797 | Potato | nucleus | 45.02 | 40.31 |
| CDY22545 | Canola | nucleus | 43.72 | 40.24 |
| Bra003317.1-P | Field mustard | nucleus | 40.69 | 39.83 |
| AT2G41940.1 | Thale cress | nucleus | 44.16 | 39.69 |
| AT3G58070.1 | Thale cress | nucleus | 42.42 | 38.74 |
| GSMUA_Achr10P... | Banana | nucleus | 44.16 | 37.5 |
| Os02t0775600-01 | Rice | nucleus | 43.29 | 35.84 |
| Zm00001d018247_P001 | Maize | nucleus | 43.29 | 35.21 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 40.69 | 34.06 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 40.69 | 32.87 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 40.26 | 32.63 |
| CDY64571 | Canola | nucleus | 44.16 | 32.38 |
| Zm00001d052118_P001 | Maize | nucleus | 42.86 | 32.35 |
| Zm00001d044980_P001 | Maize | nucleus | 34.63 | 32.26 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 39.39 | 32.04 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 38.96 | 31.91 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 23.81 | 31.79 |
| EES07621 | Sorghum | nucleus | 41.99 | 31.49 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 32.47 | 31.25 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 32.47 | 31.12 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 32.03 | 30.83 |
| Zm00001d037136_P001 | Maize | nucleus | 34.63 | 30.08 |
| OQU76029 | Sorghum | plastid | 34.2 | 26.96 |
| PGSC0003DMT400038786 | Potato | cytosol, mitochondrion, nucleus | 14.29 | 25.78 |
| PGSC0003DMT400037720 | Potato | nucleus | 22.08 | 23.72 |
| PGSC0003DMT400037771 | Potato | nucleus | 20.35 | 22.17 |
| PGSC0003DMT400040327 | Potato | nucleus | 20.78 | 19.35 |
| HORVU7Hr1G034940.1 | Barley | plastid | 9.52 | 17.6 |
| PGSC0003DMT400062866 | Potato | nucleus | 16.02 | 16.09 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400013992 | EnsemblPlantsGene:PGSC0003DMG400005486 | EntrezGene:107061484 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400005486 | RefSeq:XP_015166274.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI00029661F1 | UniProt:M1A3L9 | MapMan:15.5.15 | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005486]
Coordinates
chr3:+:15151454..15152341
Molecular Weight (calculated)
26182.2 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.926
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKTDRETRD FMNVESFSQL PFIRPVPAPP KEKTGIRLFG KEFGAGTGDA EESESETIEA EEIIKENSNT NTNTNRKFEC HYCCRNFPTS QALGGHQNAH
101: KRERQHAKRV HLQSAMVHGA AAEANNIYGI MNYRVPNYHH HHPSTWMTNS TTRFYGSPYN SSHHHHHHQT PPINGSPLAL WRIPAAPTYN NSSNYGRPVV
201: FTANNHQDFK SSPIINTTSS SQDHVSLDLH L
101: KRERQHAKRV HLQSAMVHGA AAEANNIYGI MNYRVPNYHH HHPSTWMTNS TTRFYGSPYN SSHHHHHHQT PPINGSPLAL WRIPAAPTYN NSSNYGRPVV
201: FTANNHQDFK SSPIINTTSS SQDHVSLDLH L
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
Arabidopsis Description
ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.