Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06054 | Canola | nucleus | 100.0 | 100.0 |
| Bra003317.1-P | Field mustard | nucleus | 70.75 | 75.85 |
| AT3G58070.1 | Thale cress | nucleus | 68.77 | 68.77 |
| Bra016900.1-P | Field mustard | nucleus | 50.59 | 50.39 |
| Bra004660.1-P | Field mustard | nucleus | 49.41 | 50.0 |
| Bra000245.1-P | Field mustard | nucleus | 46.25 | 47.18 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 43.08 | 45.8 |
| PGSC0003DMT400013992 | Potato | nucleus | 41.11 | 45.02 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 18.97 | 44.04 |
| Solyc03g058160.2.1 | Tomato | nucleus | 35.97 | 41.36 |
| KRG95435 | Soybean | nucleus | 41.5 | 41.18 |
| KRH67106 | Soybean | nucleus | 41.9 | 40.93 |
| Bra028724.1-P | Field mustard | nucleus | 29.25 | 40.66 |
| KRH38054 | Soybean | nucleus | 40.32 | 33.22 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 22.13 | 32.37 |
| GSMUA_Achr10P... | Banana | nucleus | 34.78 | 32.35 |
| Zm00001d044980_P001 | Maize | nucleus | 30.83 | 31.45 |
| Zm00001d037136_P001 | Maize | nucleus | 31.62 | 30.08 |
| Zm00001d018247_P001 | Maize | nucleus | 33.6 | 29.93 |
| Os02t0775600-01 | Rice | nucleus | 32.41 | 29.39 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 31.62 | 28.99 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 27.27 | 28.63 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 32.02 | 28.42 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 31.62 | 28.37 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 26.88 | 28.33 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 26.88 | 28.33 |
| OQU76029 | Sorghum | plastid | 32.81 | 28.33 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 31.62 | 28.17 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 31.23 | 27.62 |
| EES07621 | Sorghum | nucleus | 33.6 | 27.6 |
| Zm00001d052118_P001 | Maize | nucleus | 33.2 | 27.45 |
| Bra004300.1-P | Field mustard | nucleus | 20.16 | 21.61 |
| Bra004200.1-P | Field mustard | nucleus | 16.21 | 21.47 |
| Bra033944.1-P | Field mustard | nucleus | 17.79 | 19.4 |
| Bra031715.1-P | Field mustard | nucleus | 15.02 | 18.63 |
| HORVU7Hr1G034940.1 | Barley | plastid | 8.7 | 17.6 |
| Bra018438.1-P | Field mustard | nucleus | 14.23 | 17.56 |
Protein Annotations
| EnsemblPlants:Bra007378.1 | EnsemblPlants:Bra007378.1-P | EnsemblPlantsGene:Bra007378 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002542DC6 | UniProt:M4CT36 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
AT3G58070 (E=4e-090) GIS | GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding
Coordinates
chrA09:-:28897246..28898007
Molecular Weight (calculated)
28278.1 Da
IEP (calculated)
8.971
GRAVY (calculated)
-1.058
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MDERNAERET KDFMNVESFS QLPFFRRPPS KDKNPKPVRL FGKDFTTGEY SGTTSQQDHS ETKHKEDEEV AEDDQTGDNG KDNSRSNNNR RFECHYCFRN
101: FPTSQALGGH QNAHKRERQL AKRGASSYFH HPDANLYGYR HYPSWSSTSL PAARFYGGNI PGSGPSSSFH TRPINGSPLG LWRSSSSFRG VYNPNAAFTS
201: HVSSDNSILS SLAGSQPHPP LQVGGSAAQN RMSSYRYGLS PNVQDHVSLD LNL
101: FPTSQALGGH QNAHKRERQL AKRGASSYFH HPDANLYGYR HYPSWSSTSL PAARFYGGNI PGSGPSSSFH TRPINGSPLG LWRSSSSFRG VYNPNAAFTS
201: HVSSDNSILS SLAGSQPHPP LQVGGSAAQN RMSSYRYGLS PNVQDHVSLD LNL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.