Factsheet for Bra028724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04997	Canola	nucleus	96.15	97.77
CDY14074	Canola	nucleus	93.41	94.44
AT5G06650.1	Thale cress	nucleus	75.27	71.73
HORVU7Hr1G034930.2	Barley	nucleus	19.23	32.11
Bra007378.1-P	Field mustard	nucleus	40.66	29.25
Bra000245.1-P	Field mustard	nucleus	39.56	29.03
Bra004660.1-P	Field mustard	nucleus	39.01	28.4
Bra016900.1-P	Field mustard	nucleus	39.56	28.35
Bra003317.1-P	Field mustard	nucleus	35.71	27.54
GSMUA_Achr8P22740_001	Banana	nucleus	35.16	25.2
GSMUA_Achr3P07800_001	Banana	nucleus	30.22	25.0
OQU80598	Sorghum	mitochondrion, nucleus, plastid	21.98	23.12
Zm00001d018247_P001	Maize	nucleus	35.71	22.89
Zm00001d044980_P001	Maize	nucleus	30.77	22.58
Os02t0775600-01	Rice	nucleus	34.62	22.58
TraesCS6B01G365700.1	Wheat	nucleus	34.07	21.68
TraesCS7D01G167600.1	Wheat	nucleus	28.57	21.67
Zm00001d037136_P001	Maize	nucleus	31.32	21.43
TraesCS7B01G071600.1	Wheat	nucleus	28.02	21.25
TraesCS7A01G167000.1	Wheat	nucleus	28.02	21.16
HORVU6Hr1G080870.1	Barley	nucleus	32.97	21.13
TraesCS6A01G335100.1	Wheat	nucleus	32.42	20.92
Zm00001d052118_P001	Maize	nucleus	35.16	20.91
TraesCS6D01G314600.1	Wheat	nucleus	32.42	20.7
EES07621	Sorghum	nucleus	34.62	20.45
OQU76029	Sorghum	plastid	31.32	19.45
Bra018438.1-P	Field mustard	nucleus	20.88	18.54
Bra004200.1-P	Field mustard	nucleus	19.23	18.32
Bra031715.1-P	Field mustard	nucleus	19.78	17.65
Bra004300.1-P	Field mustard	nucleus	22.53	17.37
Bra033944.1-P	Field mustard	nucleus	21.43	16.81
HORVU7Hr1G034940.1	Barley	plastid	7.14	10.4

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra028724	EnsemblPlants:Bra028724.1	EnsemblPlants:Bra028724.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0008150	GO:GO:0009719	GO:GO:0009735	GO:GO:0009739
GO:GO:0009987	GO:GO:0010026	GO:GO:0030154	InterPro:IPR013087	UniProt:M4EIV9	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	SUPFAM:SSF57667	UniParc:UPI0002543189
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

AT5G06650 (E=1e-056) GIS2 | GIS2 (GLABROUS INFLORESCENCE STEMS 2); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA02:+:2367767..2368315

Molecular Weight (calculated)

21089.3 Da

IEP (calculated)

9.643

GRAVY (calculated)

-1.081

Length

182 amino acids

Sequence
(BLAST)

001: MKTHDFMNVE SFSPKEGPIR LFGFEFGTSQ EESESSESIN EVNTTNNNKD KRFKCHYCSR KFPTSQALGG HQNAHKRERQ QTKRFHLHSN AAAFFHRNQY
101: HFAASRFFED HFSLEAARIN DARLGLLRRY NSSKSFYDHD RRSYQTRPTY GGGGGGDGKS RHDLFCESKT NVTDHVSLDL RL

Best Arabidopsis Sequence Match ( AT5G06650.1 )
(BLAST)

001: MKTYDFMNVN SFSPKERPIR LFGFEFGASH EESESKDNYN ENNESIKDDN KEKRFKCHYC FRNFPTSQAL GGHQNAHKRE RQQTKRFNLH SNAAAFFHRQ
101: QNHIAASRLY EDRYSLEAVQ INDARLGLCR MYNSSASFNR DRSSYYNRYI PWFIGDHQTR PTYVGGGSSS HGLFYESKKN VPDHVSLDLR L

Arabidopsis Description

GIS2Zinc finger protein GIS2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG05]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.