Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G365700.1 | Wheat | nucleus | 97.52 | 96.15 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 94.68 | 93.68 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 93.26 | 92.61 |
| Os02t0775600-01 | Rice | nucleus | 68.79 | 69.53 |
| Zm00001d018247_P001 | Maize | nucleus | 65.96 | 65.49 |
| EES07621 | Sorghum | nucleus | 70.21 | 64.29 |
| Zm00001d052118_P001 | Maize | nucleus | 65.96 | 60.78 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 40.43 | 47.3 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 36.17 | 42.86 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 36.52 | 40.55 |
| PGSC0003DMT400013992 | Potato | nucleus | 31.91 | 38.96 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 29.08 | 37.27 |
| KRG95435 | Soybean | nucleus | 33.69 | 37.25 |
| Solyc03g058160.2.1 | Tomato | nucleus | 28.72 | 36.82 |
| KRH67106 | Soybean | nucleus | 32.98 | 35.91 |
| CDY57240 | Canola | nucleus | 30.14 | 35.56 |
| TraesCS5A01G231500.1 | Wheat | nucleus | 37.59 | 35.22 |
| Bra004660.1-P | Field mustard | nucleus | 31.21 | 35.2 |
| CDX79901 | Canola | nucleus | 31.21 | 35.2 |
| Bra003317.1-P | Field mustard | nucleus | 29.43 | 35.17 |
| CDY35394 | Canola | nucleus | 30.85 | 35.08 |
| CDY22545 | Canola | nucleus | 31.21 | 35.06 |
| Bra000245.1-P | Field mustard | nucleus | 30.5 | 34.68 |
| CDY06892 | Canola | nucleus | 31.21 | 34.65 |
| Bra016900.1-P | Field mustard | nucleus | 31.21 | 34.65 |
| PGSC0003DMT400060839 | Potato | nucleus | 29.08 | 34.45 |
| GSMUA_Achr10P... | Banana | nucleus | 32.98 | 34.19 |
| Solyc10g080600.1.1 | Tomato | nucleus | 28.37 | 34.19 |
| TraesCS4A01G079300.1 | Wheat | nucleus | 34.04 | 34.04 |
| CDY14805 | Canola | nucleus | 30.85 | 33.98 |
| AT2G41940.1 | Thale cress | nucleus | 30.14 | 33.07 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 31.91 | 32.61 |
| CDY56241 | Canola | nucleus | 25.89 | 32.59 |
| CDX71975 | Canola | nucleus | 29.08 | 32.54 |
| Bra028724.1-P | Field mustard | nucleus | 20.92 | 32.42 |
| AT3G58070.1 | Thale cress | nucleus | 29.08 | 32.41 |
| KRH38054 | Soybean | nucleus | 35.11 | 32.25 |
| CDY14074 | Canola | nucleus | 20.57 | 32.22 |
| Solyc10g078970.1.1 | Tomato | nucleus | 23.4 | 32.2 |
| AT5G06650.1 | Thale cress | nucleus | 21.63 | 31.94 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 26.24 | 31.9 |
| CDY04997 | Canola | nucleus | 20.21 | 31.84 |
| CDY06054 | Canola | nucleus | 28.37 | 31.62 |
| Bra007378.1-P | Field mustard | nucleus | 28.37 | 31.62 |
| PGSC0003DMT400029797 | Potato | nucleus | 28.37 | 31.01 |
| CDY64571 | Canola | nucleus | 30.5 | 27.3 |
| TraesCS3A01G036000.1 | Wheat | nucleus | 19.5 | 21.4 |
| TraesCS3A01G373000.1 | Wheat | nucleus | 17.38 | 20.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G335100.1 | EnsemblPlantsGene:TraesCS6A01G335100 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF238 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr6A:-:566429836..566430684
Molecular Weight (calculated)
30063.3 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.611
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPQEVRRV DSFSQLPFIR PAAATAQQQQ QQQQARDTIR LFGREFSNND ALLQQQRKQE AGAGSPDAAN GSTVTSEGNG GGGAKGGASG AAAGETRKFE
101: CHYCCRNFPT SQALGGHQNA HKRERQHAKR ASLAMHRYVP GGHHMYGALL NYHHHHPAAA RYDQPPPHYP MWTTASMGPY GGGGPGSMSQ PIDGSPVAQG
201: HWRVPLPAVE NFGAAVRHGA AADMPPAVVV RPGEVMTCKD EKVVMSLLSS SPSLSSCSST SPEKLGRCEL GQQEALSLDL HL
101: CHYCCRNFPT SQALGGHQNA HKRERQHAKR ASLAMHRYVP GGHHMYGALL NYHHHHPAAA RYDQPPPHYP MWTTASMGPY GGGGPGSMSQ PIDGSPVAQG
201: HWRVPLPAVE NFGAAVRHGA AADMPPAVVV RPGEVMTCKD EKVVMSLLSS SPSLSSCSST SPEKLGRCEL GQQEALSLDL HL
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
Arabidopsis Description
ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.