Factsheet for PGSC0003DMT400029797

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078990.1.1	Tomato	cytoskeleton, cytosol, nucleus	78.29	87.07
PGSC0003DMT400013992	Potato	nucleus	40.31	45.02
HORVU7Hr1G034930.2	Barley	nucleus	16.28	38.53
PGSC0003DMT400060839	Potato	nucleus	31.78	34.45
GSMUA_Achr10P...	Banana	nucleus	32.95	31.25
Os02t0775600-01	Rice	nucleus	33.72	31.18
Zm00001d018247_P001	Maize	nucleus	33.72	30.63
OQU80598	Sorghum	mitochondrion, nucleus, plastid	19.77	29.48
TraesCS6B01G365700.1	Wheat	nucleus	32.56	29.37
TraesCS6D01G314600.1	Wheat	nucleus	32.17	29.12
HORVU6Hr1G080870.1	Barley	nucleus	31.78	28.87
TraesCS7D01G167600.1	Wheat	nucleus	26.74	28.75
Zm00001d044980_P001	Maize	nucleus	27.52	28.63
GSMUA_Achr3P02080_001	Banana	nucleus	30.62	28.62
TraesCS6A01G335100.1	Wheat	nucleus	31.01	28.37
TraesCS7A01G167000.1	Wheat	nucleus	26.36	28.22
Zm00001d052118_P001	Maize	nucleus	33.33	28.1
EES07621	Sorghum	nucleus	33.33	27.92
TraesCS7B01G071600.1	Wheat	nucleus	25.58	27.5
Zm00001d037136_P001	Maize	nucleus	26.74	25.94
PGSC0003DMT400038786	Potato	cytosol, mitochondrion, nucleus	12.79	25.78
OQU76029	Sorghum	plastid	28.29	24.91
PGSC0003DMT400037720	Potato	nucleus	19.77	23.72
PGSC0003DMT400037771	Potato	nucleus	18.22	22.17
PGSC0003DMT400040327	Potato	nucleus	17.83	18.55
HORVU7Hr1G034940.1	Barley	plastid	8.91	18.4
PGSC0003DMT400062866	Potato	nucleus	14.34	16.09

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
UniProt:M1ATE8	PFAM:PF13912	EnsemblPlantsGene:PGSC0003DMG400011450	PGSC:PGSC0003DMG400011450	EnsemblPlants:PGSC0003DMT400029797	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	SUPFAM:SSF57667	UniParc:UPI000294F7C5	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011450]

Coordinates

chr10:+:58775232..58776224

Molecular Weight (calculated)

29100.9 Da

IEP (calculated)

6.925

GRAVY (calculated)

-0.753

Length

258 amino acids

Sequence
(BLAST)

001: MEKMEREALD FMNVESFSQL PITRPVNEKP IRLFGKEFGG GGGDSTNLTT TATNMSESID NNPFHDEPET NTVNLANCAV KEIHIDKNVE IMRKYECHYC
101: FRSFPTSQAL GGHQNAHKKE RLNAKRPHLQ SSIVHDQPSI YGITNRHRLG EATASTRLTH HHSTWTNINN NTPRFNGNGH NVNIINPING NPLTFWQIPP
201: TVYHNNSSSS DNSNNLVFSN DDLIRTPPMV NVSTNCESNF VYKPKGEVQD HVSLDLHL

Best Arabidopsis Sequence Match ( AT2G41940.1 )
(BLAST)

001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL

Arabidopsis Description

ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.