Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037136_P001 | Maize | nucleus | 83.87 | 78.2 |
| OQU76029 | Sorghum | plastid | 84.27 | 71.33 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 44.35 | 63.58 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 25.0 | 56.88 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 47.98 | 49.38 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 47.58 | 49.17 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 46.77 | 48.33 |
| Zm00001d018247_P001 | Maize | nucleus | 47.18 | 41.2 |
| Zm00001d052118_P001 | Maize | nucleus | 45.56 | 36.93 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 34.68 | 36.13 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 31.45 | 35.45 |
| HORVU7Hr1G034940.1 | Barley | plastid | 17.74 | 35.2 |
| PGSC0003DMT400013992 | Potato | nucleus | 32.26 | 34.63 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 35.08 | 34.25 |
| Solyc03g058160.2.1 | Tomato | nucleus | 29.03 | 32.73 |
| KRG95435 | Soybean | nucleus | 32.66 | 31.76 |
| CDY56241 | Canola | nucleus | 28.63 | 31.7 |
| Bra003317.1-P | Field mustard | nucleus | 29.84 | 31.36 |
| CDY57240 | Canola | nucleus | 29.84 | 30.96 |
| CDX71975 | Canola | nucleus | 31.45 | 30.95 |
| KRH67106 | Soybean | nucleus | 32.26 | 30.89 |
| CDY06054 | Canola | nucleus | 31.45 | 30.83 |
| Bra007378.1-P | Field mustard | nucleus | 31.45 | 30.83 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 34.27 | 30.8 |
| Bra028724.1-P | Field mustard | nucleus | 22.58 | 30.77 |
| PGSC0003DMT400060839 | Potato | nucleus | 29.03 | 30.25 |
| Solyc10g078970.1.1 | Tomato | nucleus | 25.0 | 30.24 |
| CDY04997 | Canola | nucleus | 21.77 | 30.17 |
| Solyc10g080600.1.1 | Tomato | nucleus | 28.23 | 29.91 |
| CDY35394 | Canola | nucleus | 29.84 | 29.84 |
| Zm00001d050111_P001 | Maize | nucleus | 37.5 | 29.62 |
| CDY14074 | Canola | nucleus | 21.37 | 29.44 |
| Bra000245.1-P | Field mustard | nucleus | 29.44 | 29.44 |
| Zm00001d005837_P001 | Maize | nucleus | 34.27 | 29.41 |
| Zm00001d020653_P001 | Maize | nucleus | 34.68 | 29.35 |
| AT3G58070.1 | Thale cress | nucleus | 29.84 | 29.25 |
| CDY22545 | Canola | nucleus | 29.44 | 29.08 |
| GSMUA_Achr10P... | Banana | nucleus | 31.85 | 29.04 |
| CDX79901 | Canola | nucleus | 29.03 | 28.8 |
| AT2G41940.1 | Thale cress | nucleus | 29.84 | 28.79 |
| CDY06892 | Canola | nucleus | 29.44 | 28.74 |
| Bra016900.1-P | Field mustard | nucleus | 29.44 | 28.74 |
| CDY14805 | Canola | nucleus | 29.44 | 28.52 |
| Bra004660.1-P | Field mustard | nucleus | 28.63 | 28.4 |
| AT5G06650.1 | Thale cress | nucleus | 21.77 | 28.27 |
| Zm00001d028222_P001 | Maize | nucleus | 35.89 | 27.9 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 25.81 | 27.59 |
| PGSC0003DMT400029797 | Potato | nucleus | 28.63 | 27.52 |
| KRH38054 | Soybean | nucleus | 33.87 | 27.36 |
| CDY64571 | Canola | nucleus | 27.82 | 21.9 |
| Zm00001d045738_P001 | Maize | nucleus | 19.35 | 21.52 |
| Zm00001d008562_P001 | Maize | nucleus | 22.18 | 20.45 |
| Zm00001d039977_P001 | Maize | nucleus | 20.56 | 19.1 |
Protein Annotations
| EnsemblPlants:Zm00001d044980_P001 | EnsemblPlants:Zm00001d044980_T001 | EnsemblPlantsGene:Zm00001d044980 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF247 |
| PFscan:PS50157 | ProteinID:AQL01238.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0004DECA59 |
| UniProt:A0A1D6NSL0 | MapMan:15.5.15 | : | : | : | : |
Description
Putative zinc finger protein
Coordinates
chr9:+:9130542..9131288
Molecular Weight (calculated)
25526.2 Da
IEP (calculated)
8.384
GRAVY (calculated)
-0.133
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPHDMHGV DSFAQLPFVR GAAPRPPAGS RDVATSIRLF GRDFSSDQQQ AVQLLLLKED AAAAAASGER KFECHYCCRN FPTSQALGGH QNAHKRERQH
101: ARRAHLEASF AAHCGAAYLP GAHLYGLFGY GGGGGGGHTA HYPAVWAGAA PGIYGGVGPV ARPPVYGAVA VPGTWRPSPP GSGGAFVAAG RPVGYGEMAG
201: KDDKAKMSVV VSLPASLPSS CLSGQSAEMI GRSELGHTDG VISLDLCL
101: ARRAHLEASF AAHCGAAYLP GAHLYGLFGY GGGGGGGHTA HYPAVWAGAA PGIYGGVGPV ARPPVYGAVA VPGTWRPSPP GSGGAFVAAG RPVGYGEMAG
201: KDDKAKMSVV VSLPASLPSS CLSGQSAEMI GRSELGHTDG VISLDLCL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.