Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92638 | Sorghum | nucleus | 79.94 | 85.86 |
| Os03t0216000-01 | Rice | nucleus | 65.52 | 70.37 |
| TraesCS4B01G244900.1 | Wheat | nucleus | 61.13 | 69.64 |
| TraesCS4A01G079300.1 | Wheat | nucleus | 61.44 | 69.5 |
| TraesCS4D01G244500.1 | Wheat | nucleus | 60.5 | 68.44 |
| GSMUA_Achr1P22000_001 | Banana | nucleus | 32.29 | 39.62 |
| Zm00001d018247_P001 | Maize | nucleus | 33.54 | 37.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.51 | 36.76 |
| Zm00001d044980_P001 | Maize | nucleus | 27.9 | 35.89 |
| Zm00001d052118_P001 | Maize | nucleus | 33.86 | 35.29 |
| Zm00001d050111_P001 | Maize | nucleus | 34.48 | 35.03 |
| Zm00001d020653_P001 | Maize | nucleus | 31.97 | 34.81 |
| Zm00001d005837_P001 | Maize | nucleus | 30.72 | 33.91 |
| Zm00001d037136_P001 | Maize | nucleus | 27.59 | 33.08 |
| Zm00001d045738_P001 | Maize | nucleus | 17.87 | 25.56 |
| Zm00001d008562_P001 | Maize | nucleus | 16.93 | 20.07 |
| Zm00001d039977_P001 | Maize | nucleus | 16.61 | 19.85 |
Protein Annotations
| EMBL:BT084815 | EnsemblPlants:Zm00001d028222_P001 | EnsemblPlants:Zm00001d028222_T001 | EnsemblPlantsGene:Zm00001d028222 | EntrezGene:100501225 | Gene3D:3.30.160.60 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF226 | PFscan:PS50157 | ProteinID:ONL95105.1 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF57667 | UniParc:UPI0001A4C3D7 | UniProt:C4J1W8 | MapMan:15.5.15 | : | : |
Description
Zinc finger protein 8
Coordinates
chr1:-:27085759..27086718
Molecular Weight (calculated)
31997.0 Da
IEP (calculated)
9.943
GRAVY (calculated)
-0.338
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGEGRDS GGGGGAASFR EAARDFSNVA SFSELPFLQR SAAPPRGSPH NSGIRIFGID VPHSPPERNS NKDATAATTT TAAASATQSS GGGGATTDSS
101: SSSSRKFECH YCCRNFPTSQ ALGGHQNAHK RERQHAKRVQ MQSAMAAAAA AAAAAGGAHH HHLLGYPQHR FGVAGPTVAT LYPSWPTMRP PAPAGAGAGA
201: VAIGGPQFYS GIGSIAQPIN GSPLLTAAGL WRGPPPPAAG HGNASLPSSP GGERRRPVAL SSSSPVFRGD DPRASTSLLA AASSPSSSSS LLLSPQGQFV
301: CEQPAATTAA EGVSLDLHL
101: SSSSRKFECH YCCRNFPTSQ ALGGHQNAHK RERQHAKRVQ MQSAMAAAAA AAAAAGGAHH HHLLGYPQHR FGVAGPTVAT LYPSWPTMRP PAPAGAGAGA
201: VAIGGPQFYS GIGSIAQPIN GSPLLTAAGL WRGPPPPAAG HGNASLPSSP GGERRRPVAL SSSSPVFRGD DPRASTSLLA AASSPSSSSS LLLSPQGQFV
301: CEQPAATTAA EGVSLDLHL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.