CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028222_P001	Maize	nucleus	85.86	79.94
TraesCS4A01G079300.1	Wheat	nucleus	66.67	70.21
Os03t0216000-01	Rice	nucleus	70.03	70.03
TraesCS4B01G244900.1	Wheat	nucleus	65.99	70.0
TraesCS4D01G244500.1	Wheat	nucleus	65.99	69.5
GSMUA_AchrUn_...	Banana	cytosol	26.26	38.24
GSMUA_Achr1P22000_001	Banana	nucleus	33.33	38.08
OQU80598	Sorghum	mitochondrion, nucleus, plastid	20.54	35.26
EES13973	Sorghum	nucleus	38.05	34.77
EES07621	Sorghum	nucleus	35.69	34.42
OQU89585	Sorghum	nucleus	34.34	33.01
OQU76029	Sorghum	plastid	28.96	29.35
EER89601	Sorghum	cytosol, nucleus, plastid	18.52	26.44
EES02547	Sorghum	nucleus	18.52	19.37

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8085300	UniProt:C5WSR9	EnsemblPlants:EER92638	ProteinID:EER92638
ProteinID:EER92638.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF226	EnsemblPlantsGene:SORBI_3001G455300	SUPFAM:SSF57667	UniParc:UPI0001A82812	RefSeq:XP_002465640.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:73143828..73145861

Molecular Weight (calculated)

30286.1 Da

IEP (calculated)

8.970

GRAVY (calculated)

-0.308

Length

297 amino acids

Sequence
(BLAST)

001: MGSGGEGSDG GAASFREAHD FSNVASFSEL PFLRSAPARE SSNNSGIRIF GIDVPHSPPE RKAKEATATT PATTAAASAT QSSSGGTSTT VVTAATDSSR
101: KFECHYCCRN FPTSQALGGH QNAHKRERQH AKRVQMQSAM AAAAAAAGGA HHHHLLGYPQ HRFGVAGPTV ATLYPSWTTM RAPAAGAAAA GAVAIGPPQF
201: YSGIGSITQP INGNPLTTGL WRGPPAGHGN TSVPPGGDRR PVALSSSVLR GDDPRASTSL LASPSSSSSL LLSPQGQFVC EQPATTAAEG VSLDLHL

Best Arabidopsis Sequence Match ( AT2G41940.1 )
(BLAST)

001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL

Arabidopsis Description

ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.