CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76029	Sorghum	plastid	75.72	44.71
Zm00001d044980_P001	Maize	nucleus	63.58	44.35
HORVU7Hr1G034930.2	Barley	nucleus	27.17	43.12
Zm00001d037136_P001	Maize	nucleus	65.9	42.86
TraesCS7B01G071600.1	Wheat	nucleus	46.82	33.75
TraesCS7A01G167000.1	Wheat	nucleus	46.24	33.2
TraesCS7D01G167600.1	Wheat	nucleus	45.66	32.92
VIT_08s0007g06870.t01	Wine grape	nucleus	36.99	26.89
EES07621	Sorghum	nucleus	44.51	25.0
GSMUA_Achr8P22740_001	Banana	nucleus	35.26	24.02
GSMUA_Achr3P02080_001	Banana	nucleus	38.15	23.91
PGSC0003DMT400013992	Potato	nucleus	31.79	23.81
Solyc03g058160.2.1	Tomato	nucleus	29.48	23.18
CDY56241	Canola	nucleus	29.48	22.77
CDY04997	Canola	nucleus	23.12	22.35
CDY35394	Canola	nucleus	31.79	22.18
Bra007378.1-P	Field mustard	nucleus	32.37	22.13
CDY06054	Canola	nucleus	32.37	22.13
Bra003317.1-P	Field mustard	nucleus	30.06	22.03
CDX79901	Canola	nucleus	31.79	22.0
Bra028724.1-P	Field mustard	nucleus	23.12	21.98
CDX71975	Canola	nucleus	31.79	21.83
GSMUA_Achr3P07800_001	Banana	nucleus	27.75	21.82
Bra000245.1-P	Field mustard	nucleus	31.21	21.77
CDY57240	Canola	nucleus	30.06	21.76
GSMUA_Achr10P...	Banana	nucleus	34.1	21.69
OQU89585	Sorghum	nucleus	38.73	21.68
CDY14074	Canola	nucleus	22.54	21.67
CDY06892	Canola	nucleus	31.79	21.65
Bra016900.1-P	Field mustard	nucleus	31.79	21.65
EES13973	Sorghum	nucleus	40.46	21.54
KRH38054	Soybean	nucleus	38.15	21.5
CDY14805	Canola	nucleus	31.79	21.48
AT5G06650.1	Thale cress	nucleus	23.7	21.47
Solyc10g078970.1.1	Tomato	nucleus	25.43	21.46
AT2G41940.1	Thale cress	nucleus	31.79	21.4
Bra004660.1-P	Field mustard	nucleus	30.64	21.2
PGSC0003DMT400060839	Potato	nucleus	28.9	21.01
CDY22545	Canola	nucleus	30.06	20.72
EER92638	Sorghum	nucleus	35.26	20.54
EER89601	Sorghum	cytosol, nucleus, plastid	24.28	20.19
AT3G58070.1	Thale cress	nucleus	29.48	20.16
Solyc10g080600.1.1	Tomato	nucleus	27.17	20.09
KRG95435	Soybean	nucleus	29.48	20.0
Solyc10g078990.1.1	Tomato	cytoskeleton, cytosol, nucleus	26.59	19.83
PGSC0003DMT400029797	Potato	nucleus	29.48	19.77
KRH67106	Soybean	nucleus	29.48	19.69
HORVU7Hr1G034940.1	Barley	plastid	12.14	16.8
CDY64571	Canola	nucleus	30.06	16.51
EES02547	Sorghum	nucleus	24.86	15.14

Protein Annotations

EnsemblPlants:OQU80598	EnsemblPlantsGene:SORBI_3007G149750	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF247	PFscan:PS50157
ProteinID:OQU80598	ProteinID:OQU80598.1	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI000B8B95B4
UniProt:A0A1Z5RA22	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:58095264..58096870

Molecular Weight (calculated)

18091.5 Da

IEP (calculated)

9.285

GRAVY (calculated)

-0.200

Length

173 amino acids

Sequence
(BLAST)

001: MASPLSRLTP KLQLSSAPRL SPTIVRPRTY RRPSDQQVPA HQLLLLKEDA AAAAGDGEGG GETAASAGGE RRFECHYCCR NFPTSQALGG HQNAHKRERQ
101: HARRAHLEAS FAAHCGAYLP GAHLYGLFGY GGHTALPPPA HYTAAAAAAA VWAAGVVPGM CGGVGPVAWP LVL

Best Arabidopsis Sequence Match ( AT5G06650.1 )
(BLAST)

001: MKTYDFMNVN SFSPKERPIR LFGFEFGASH EESESKDNYN ENNESIKDDN KEKRFKCHYC FRNFPTSQAL GGHQNAHKRE RQQTKRFNLH SNAAAFFHRQ
101: QNHIAASRLY EDRYSLEAVQ INDARLGLCR MYNSSASFNR DRSSYYNRYI PWFIGDHQTR PTYVGGGSSS HGLFYESKKN VPDHVSLDLR L

Arabidopsis Description

GIS2Zinc finger protein GIS2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG05]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.