Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56241 | Canola | nucleus | 85.77 | 91.52 |
| CDX71975 | Canola | nucleus | 77.82 | 73.81 |
| CDY06054 | Canola | nucleus | 77.41 | 73.12 |
| AT3G58070.1 | Thale cress | nucleus | 65.69 | 62.06 |
| CDY06892 | Canola | nucleus | 51.88 | 48.82 |
| CDX79901 | Canola | nucleus | 51.05 | 48.8 |
| CDY14805 | Canola | nucleus | 51.46 | 48.05 |
| CDY35394 | Canola | nucleus | 49.79 | 47.98 |
| CDY22545 | Canola | nucleus | 49.37 | 47.01 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 44.35 | 44.54 |
| PGSC0003DMT400013992 | Potato | nucleus | 41.84 | 43.29 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 18.41 | 40.37 |
| Solyc03g058160.2.1 | Tomato | nucleus | 36.82 | 40.0 |
| KRG95435 | Soybean | nucleus | 42.26 | 39.61 |
| KRH67106 | Soybean | nucleus | 42.26 | 39.0 |
| CDY04997 | Canola | nucleus | 28.87 | 38.55 |
| CDY14074 | Canola | nucleus | 28.87 | 38.33 |
| CDY64571 | Canola | nucleus | 49.79 | 37.78 |
| Os02t0775600-01 | Rice | nucleus | 38.49 | 32.97 |
| KRH38054 | Soybean | nucleus | 42.26 | 32.9 |
| GSMUA_Achr10P... | Banana | nucleus | 37.24 | 32.72 |
| Zm00001d018247_P001 | Maize | nucleus | 38.08 | 32.04 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 35.98 | 30.18 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 35.56 | 30.14 |
| Zm00001d037136_P001 | Maize | nucleus | 33.47 | 30.08 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 21.76 | 30.06 |
| Zm00001d044980_P001 | Maize | nucleus | 30.96 | 29.84 |
| Zm00001d052118_P001 | Maize | nucleus | 38.08 | 29.74 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 35.56 | 29.72 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 29.71 | 29.58 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 35.15 | 29.58 |
| EES07621 | Sorghum | nucleus | 38.08 | 29.55 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 29.71 | 29.46 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 29.29 | 29.17 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 31.8 | 27.54 |
| OQU76029 | Sorghum | plastid | 33.05 | 26.96 |
| CDX96114 | Canola | nucleus | 17.57 | 21.99 |
| HORVU7Hr1G034940.1 | Barley | plastid | 11.3 | 21.6 |
| CDY01779 | Canola | nucleus | 17.57 | 21.43 |
| CDY01910 | Canola | nucleus | 21.34 | 21.43 |
| CDX96028 | Canola | nucleus | 20.92 | 21.19 |
| CDY20629 | Canola | nucleus | 17.15 | 19.9 |
| CDX81505 | Canola | nucleus | 19.25 | 19.83 |
| CDY67985 | Canola | nucleus | 19.25 | 19.57 |
| CDY67406 | Canola | nucleus | 16.74 | 19.42 |
| CDY34889 | Canola | nucleus | 16.32 | 19.31 |
| CDY20951 | Canola | nucleus | 16.32 | 19.02 |
Protein Annotations
| EnsemblPlants:CDY57240 | EnsemblPlantsGene:GSBRNA2T00020720001 | GO:A0A078IYG1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 | PFscan:PS50157 |
| ProteinID:CDY57240 | ProteinID:CDY57240.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0004EC92C9 |
| UniProt:A0A078IYG1 | MapMan:15.5.15 | : | : | : | : |
Description
BnaCnng31700DBnaCnng31700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYG1]
Coordinates
chrLK033558:+:11807..12526
Molecular Weight (calculated)
26921.6 Da
IEP (calculated)
7.837
GRAVY (calculated)
-1.019
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MDELDGKRET QDFMNVESFS QLPFFRRPPS KSKPIRLFGK YFTGGDYFGE DHSETNNKED KEKDEENQTE ENGKDNSINN NRRFECRYCF RNFPTSQALG
101: GHQNAHKRER QLAKRSASSY FHHPDANLYG YNHYPSWSSG SLPAARFYGA GHTFGTSSSY VTRPINGSPF GLWRVPPSSE AAFTSHHDSY NNSTSLFLAG
201: SQPHPPLHVG GSSAQNRMSS YGHGLSPSVK DNVSLDLHL
101: GHQNAHKRER QLAKRSASSY FHHPDANLYG YNHYPSWSSG SLPAARFYGA GHTFGTSSSY VTRPINGSPF GLWRVPPSSE AAFTSHHDSY NNSTSLFLAG
201: SQPHPPLHVG GSSAQNRMSS YGHGLSPSVK DNVSLDLHL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.