Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016900.1-P | Field mustard | nucleus | 94.92 | 95.67 |
| CDY06892 | Canola | nucleus | 94.14 | 94.88 |
| CDX79901 | Canola | nucleus | 84.77 | 86.8 |
| AT2G41940.1 | Thale cress | nucleus | 81.64 | 81.32 |
| CDY35394 | Canola | nucleus | 76.95 | 79.44 |
| CDY22545 | Canola | nucleus | 76.17 | 77.69 |
| CDY64571 | Canola | nucleus | 81.25 | 66.03 |
| CDY57240 | Canola | nucleus | 48.05 | 51.46 |
| CDX71975 | Canola | nucleus | 50.0 | 50.79 |
| CDY06054 | Canola | nucleus | 49.61 | 50.2 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 44.53 | 47.9 |
| CDY56241 | Canola | nucleus | 41.8 | 47.77 |
| PGSC0003DMT400013992 | Potato | nucleus | 41.02 | 45.45 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 19.14 | 44.95 |
| KRG95435 | Soybean | nucleus | 42.97 | 43.14 |
| KRH67106 | Soybean | nucleus | 43.36 | 42.86 |
| Solyc03g058160.2.1 | Tomato | nucleus | 35.94 | 41.82 |
| CDY04997 | Canola | nucleus | 26.95 | 38.55 |
| CDY14074 | Canola | nucleus | 26.56 | 37.78 |
| KRH38054 | Soybean | nucleus | 43.75 | 36.48 |
| GSMUA_Achr10P... | Banana | nucleus | 38.28 | 36.03 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 35.55 | 32.97 |
| Os02t0775600-01 | Rice | nucleus | 35.55 | 32.62 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 21.48 | 31.79 |
| Zm00001d018247_P001 | Maize | nucleus | 35.16 | 31.69 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 34.38 | 30.88 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 33.98 | 30.85 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 34.38 | 30.77 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 33.59 | 30.28 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 28.12 | 30.0 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 28.12 | 29.88 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 27.73 | 29.58 |
| Zm00001d044980_P001 | Maize | nucleus | 28.52 | 29.44 |
| Zm00001d052118_P001 | Maize | nucleus | 34.77 | 29.09 |
| EES07621 | Sorghum | nucleus | 34.77 | 28.9 |
| Zm00001d037136_P001 | Maize | nucleus | 28.91 | 27.82 |
| OQU76029 | Sorghum | plastid | 30.86 | 26.96 |
| CDX96114 | Canola | nucleus | 16.8 | 22.51 |
| CDY01779 | Canola | nucleus | 16.8 | 21.94 |
| CDX96028 | Canola | nucleus | 19.92 | 21.61 |
| CDX81505 | Canola | nucleus | 19.53 | 21.55 |
| CDY01910 | Canola | nucleus | 19.92 | 21.43 |
| CDY67985 | Canola | nucleus | 19.53 | 21.28 |
| CDY20629 | Canola | nucleus | 16.8 | 20.87 |
| HORVU7Hr1G034940.1 | Barley | plastid | 10.16 | 20.8 |
| CDY34889 | Canola | nucleus | 16.41 | 20.79 |
| CDY20951 | Canola | nucleus | 16.41 | 20.49 |
| CDY67406 | Canola | nucleus | 16.02 | 19.9 |
Protein Annotations
| EnsemblPlants:CDY14805 | EnsemblPlantsGene:GSBRNA2T00084677001 | GO:A0A078FK48 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 |
| PFscan:PS50157 | ProteinID:CDY14805 | ProteinID:CDY14805.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EE76FD | UniProt:A0A078FK48 | MapMan:15.5.15 | : | : | : |
Description
BnaC04g48020DBnaC04g48020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FK48]
Coordinates
chrLK032047:+:487546..488316
Molecular Weight (calculated)
29323.6 Da
IEP (calculated)
7.836
GRAVY (calculated)
-1.139
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKSSIIR LFGQELGGDN SSDAQQENFY VDSSETTTTK INEESSENVK DKDKDKDKEK DNSNNRRFEC
101: HYCFRNFPTS QALGGHQNAH KRERQHAKRG SMPSYLHHAD HHHVYGFVNS HHHCHYPTWT TEARFYGGGV GGNQTPSYYS RTLLPPPSSS NPPTINGSPL
201: GLWRVPPPST SANSIHGVYS ASPAFRTYEQ ERKEPNWPYR LMKPNVQDHV SLDLHL
101: HYCFRNFPTS QALGGHQNAH KRERQHAKRG SMPSYLHHAD HHHVYGFVNS HHHCHYPTWT TEARFYGGGV GGNQTPSYYS RTLLPPPSSS NPPTINGSPL
201: GLWRVPPPST SANSIHGVYS ASPAFRTYEQ ERKEPNWPYR LMKPNVQDHV SLDLHL
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
Arabidopsis Description
ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.