Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004200.1-P | Field mustard | nucleus | 90.31 | 92.67 |
| CDX96114 | Canola | nucleus | 90.31 | 92.67 |
| AT1G67030.1 | Thale cress | nucleus | 81.12 | 80.71 |
| VIT_14s0006g02730.t01 | Wine grape | cytosol, mitochondrion, nucleus | 42.86 | 40.0 |
| Solyc05g009170.1.1 | Tomato | nucleus | 40.31 | 37.26 |
| PGSC0003DMT400037771 | Potato | nucleus | 39.8 | 36.79 |
| Solyc05g009180.1.1 | Tomato | nucleus | 38.78 | 35.35 |
| PGSC0003DMT400037720 | Potato | nucleus | 38.78 | 35.35 |
| CDY67985 | Canola | nucleus | 39.8 | 33.19 |
| CDX81505 | Canola | nucleus | 39.29 | 33.19 |
| CDY01910 | Canola | nucleus | 39.8 | 32.77 |
| CDX96028 | Canola | nucleus | 39.29 | 32.63 |
| CDY34889 | Canola | nucleus | 21.94 | 21.29 |
| CDY67406 | Canola | nucleus | 21.43 | 20.39 |
| CDY20951 | Canola | nucleus | 20.41 | 19.51 |
| CDY20629 | Canola | nucleus | 20.41 | 19.42 |
| CDY35394 | Canola | nucleus | 23.47 | 18.55 |
| CDY56241 | Canola | nucleus | 20.92 | 18.3 |
| CDY22545 | Canola | nucleus | 22.96 | 17.93 |
| CDY04997 | Canola | nucleus | 16.33 | 17.88 |
| CDY14074 | Canola | nucleus | 16.33 | 17.78 |
| CDY57240 | Canola | nucleus | 21.43 | 17.57 |
| CDY06892 | Canola | nucleus | 22.45 | 17.32 |
| CDX79901 | Canola | nucleus | 21.94 | 17.2 |
| CDY14805 | Canola | nucleus | 21.94 | 16.8 |
| CDX71975 | Canola | nucleus | 20.92 | 16.27 |
| CDY06054 | Canola | nucleus | 20.92 | 16.21 |
| CDY64571 | Canola | nucleus | 21.94 | 13.65 |
Protein Annotations
| EnsemblPlants:CDY01779 | EnsemblPlantsGene:GSBRNA2T00112911001 | GO:A0A078EM14 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF243 | PFscan:PS50157 |
| ProteinID:CDY01779 | ProteinID:CDY01779.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0004EDD553 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
BnaC06g28190D
Coordinates
chrLK031929:+:213913..214503
Molecular Weight (calculated)
21665.7 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.716
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDTSSLKL FGINLLQTTS DPDQSPEPRS EPEPESRKYE CQYCCREFAN SQALGGHQNA HKKERQLLKR AQMLAARGLP RHNNYHPHEN PLLSAFAPLP
101: HFLSQPHMML SPSSSTSKWL YGEHVPSQKA VGPMYFHGGS GRRGFYGGGM ETMAGDVRAH GGSLPEMRRF AGDNDRISEV KLDNGIGLNL HLSLGP
101: HFLSQPHMML SPSSSTSKWL YGEHVPSQKA VGPMYFHGGS GRRGFYGGGM ETMAGDVRAH GGSLPEMRRF AGDNDRISEV KLDNGIGLNL HLSLGP
001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP
Arabidopsis Description
ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.