Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06054 | Canola | nucleus | 95.63 | 95.26 |
| CDY56241 | Canola | nucleus | 69.44 | 78.12 |
| CDY57240 | Canola | nucleus | 73.81 | 77.82 |
| AT3G58070.1 | Thale cress | nucleus | 70.24 | 69.96 |
| CDY06892 | Canola | nucleus | 51.19 | 50.79 |
| CDY14805 | Canola | nucleus | 50.79 | 50.0 |
| CDX79901 | Canola | nucleus | 49.6 | 50.0 |
| CDY22545 | Canola | nucleus | 48.02 | 48.21 |
| CDY35394 | Canola | nucleus | 47.22 | 47.98 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 43.25 | 45.8 |
| PGSC0003DMT400013992 | Potato | nucleus | 40.87 | 44.59 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 19.05 | 44.04 |
| KRG95435 | Soybean | nucleus | 42.06 | 41.57 |
| KRH67106 | Soybean | nucleus | 42.46 | 41.31 |
| Solyc03g058160.2.1 | Tomato | nucleus | 35.71 | 40.91 |
| CDY04997 | Canola | nucleus | 28.57 | 40.22 |
| CDY14074 | Canola | nucleus | 28.57 | 40.0 |
| CDY64571 | Canola | nucleus | 49.6 | 39.68 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 33.09 |
| KRH38054 | Soybean | nucleus | 39.68 | 32.57 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 21.83 | 31.79 |
| Zm00001d044980_P001 | Maize | nucleus | 30.95 | 31.45 |
| Zm00001d037136_P001 | Maize | nucleus | 32.14 | 30.45 |
| Zm00001d018247_P001 | Maize | nucleus | 34.13 | 30.28 |
| Os02t0775600-01 | Rice | nucleus | 32.94 | 29.75 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 32.14 | 29.35 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 32.94 | 29.12 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 32.54 | 29.08 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 32.54 | 28.87 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 27.38 | 28.75 |
| OQU76029 | Sorghum | plastid | 33.33 | 28.67 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 27.38 | 28.63 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 26.98 | 28.33 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 32.14 | 28.32 |
| EES07621 | Sorghum | nucleus | 34.13 | 27.92 |
| Zm00001d052118_P001 | Maize | nucleus | 33.73 | 27.78 |
| CDY01910 | Canola | nucleus | 21.03 | 22.27 |
| CDX96028 | Canola | nucleus | 20.63 | 22.03 |
| CDX96114 | Canola | nucleus | 16.27 | 21.47 |
| CDY01779 | Canola | nucleus | 16.27 | 20.92 |
| CDX81505 | Canola | nucleus | 19.05 | 20.69 |
| CDY67985 | Canola | nucleus | 19.05 | 20.43 |
| CDY20629 | Canola | nucleus | 15.08 | 18.45 |
| CDY67406 | Canola | nucleus | 15.08 | 18.45 |
| HORVU7Hr1G034940.1 | Barley | plastid | 9.13 | 18.4 |
| CDY34889 | Canola | nucleus | 14.68 | 18.32 |
| CDY20951 | Canola | nucleus | 14.68 | 18.05 |
Protein Annotations
| EnsemblPlants:CDX71975 | EnsemblPlantsGene:GSBRNA2T00155744001 | GO:A0A078C526 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:CDX71975 | ProteinID:CDX71975.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EAFC54 | MapMan:15.5.15 | : | : | : | : |
Description
BnaC08g28990D
Coordinates
chrLK031795:+:1586314..1587072
Molecular Weight (calculated)
28232.2 Da
IEP (calculated)
8.628
GRAVY (calculated)
-1.044
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MDERNAERET KDFMNVESFS QLPFFRRPPS KDKNPKPIRL FGKDFTIGEY SGTTSQQDHS ETKQKEDEEV EDDQTGDNGK DNSTSNNNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGASSYFHH PDTNLYGYRH YPSWSSTSLP AARFYGGHIT GPGPSSSYHT RPINGSPLGL WRSSSSVRGV YNPNAVFTSH
201: VSSDNSILSS LAGSQPHPPL QVGGSAAQNR MSSYRYGLSP NVQDHVSLDL NL
101: PTSQALGGHQ NAHKRERQLA KRGASSYFHH PDTNLYGYRH YPSWSSTSLP AARFYGGHIT GPGPSSSYHT RPINGSPLGL WRSSSSVRGV YNPNAVFTSH
201: VSSDNSILSS LAGSQPHPPL QVGGSAAQNR MSSYRYGLSP NVQDHVSLDL NL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.