CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81505	Canola	nucleus	97.45	98.71
Bra033944.1-P	Field mustard	nucleus	96.17	97.41
CDX96028	Canola	nucleus	83.83	83.47
CDY01910	Canola	nucleus	83.4	82.35
AT1G68360.1	Thale cress	nucleus	84.68	81.56
VIT_01s0011g03780.t01	Wine grape	nucleus	49.36	52.49
PGSC0003DMT400037771	Potato	nucleus	47.23	52.36
PGSC0003DMT400037720	Potato	nucleus	47.66	52.09
Solyc05g009170.1.1	Tomato	nucleus	46.38	51.42
Solyc05g009180.1.1	Tomato	nucleus	45.96	50.23
KRG90856	Soybean	nucleus	49.36	41.28
KRH35924	Soybean	nucleus	48.51	40.28
CDY01779	Canola	nucleus	33.19	39.8
CDX96114	Canola	nucleus	31.06	38.22
CDY20951	Canola	nucleus	20.85	23.9
CDY20629	Canola	nucleus	20.85	23.79
CDY67406	Canola	nucleus	20.85	23.79
CDY34889	Canola	nucleus	20.43	23.76
CDY04997	Canola	nucleus	16.6	21.79
CDY14074	Canola	nucleus	16.6	21.67
CDY22545	Canola	nucleus	22.55	21.12
CDY35394	Canola	nucleus	22.13	20.97
CDX79901	Canola	nucleus	20.85	19.6
CDY14805	Canola	nucleus	21.28	19.53
CDY06892	Canola	nucleus	20.85	19.29
CDY57240	Canola	nucleus	19.57	19.25
CDX71975	Canola	nucleus	20.43	19.05
CDY06054	Canola	nucleus	20.43	18.97
CDY56241	Canola	nucleus	17.87	18.75
CDY64571	Canola	nucleus	20.43	15.24

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:A0A078JNB7	UniProt:A0A078JNB7	EnsemblPlants:CDY67985	ProteinID:CDY67985
ProteinID:CDY67985.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00068379001	InterPro:IPR013087
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF237	SUPFAM:SSF57667	UniParc:UPI0004EDE753
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

BnaCnng57180DBnaCnng57180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNB7]

Coordinates

chrLK036726:+:4294..5130

Molecular Weight (calculated)

25006.9 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.666

Length

235 amino acids

Sequence
(BLAST)

001: MEEIDFRSKT STSRLKLFGF SVDGEEDLFD QSVRTNQSSV STEPSEFPVG SSGGSGSSVR SRGGGGGGGG ERKYECQYCC REFGNSQALG GHQNAHKKER
101: QQLKRAQLQA TRNAAANYSN AGSASPYLRN PIVSAFAPQP HHLSSAMSPP GGGGPWMYLP RVSPSHLHVP HGCVIQDGAG GFSYDSGFRF NGSQMRHVQT
201: HGPRPSVKGF SRDVGPTFDD GLGLDLHLSL APAGH

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.