Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033944.1-P | Field mustard | nucleus | 97.84 | 97.84 |
| CDY67985 | Canola | nucleus | 98.71 | 97.45 |
| CDX96028 | Canola | nucleus | 85.34 | 83.9 |
| CDY01910 | Canola | nucleus | 84.91 | 82.77 |
| AT1G68360.1 | Thale cress | nucleus | 85.78 | 81.56 |
| VIT_01s0011g03780.t01 | Wine grape | nucleus | 49.57 | 52.04 |
| PGSC0003DMT400037771 | Potato | nucleus | 47.41 | 51.89 |
| PGSC0003DMT400037720 | Potato | nucleus | 47.84 | 51.63 |
| Solyc05g009170.1.1 | Tomato | nucleus | 46.55 | 50.94 |
| Solyc05g009180.1.1 | Tomato | nucleus | 46.12 | 49.77 |
| KRG90856 | Soybean | nucleus | 49.57 | 40.93 |
| KRH35924 | Soybean | nucleus | 48.71 | 39.93 |
| CDY01779 | Canola | nucleus | 33.19 | 39.29 |
| CDX96114 | Canola | nucleus | 31.03 | 37.7 |
| CDY20951 | Canola | nucleus | 21.12 | 23.9 |
| CDY20629 | Canola | nucleus | 21.12 | 23.79 |
| CDY67406 | Canola | nucleus | 21.12 | 23.79 |
| CDY34889 | Canola | nucleus | 20.69 | 23.76 |
| CDY04997 | Canola | nucleus | 16.81 | 21.79 |
| CDY14074 | Canola | nucleus | 16.81 | 21.67 |
| CDY22545 | Canola | nucleus | 22.84 | 21.12 |
| CDY35394 | Canola | nucleus | 22.41 | 20.97 |
| CDX79901 | Canola | nucleus | 21.12 | 19.6 |
| CDY14805 | Canola | nucleus | 21.55 | 19.53 |
| CDY06892 | Canola | nucleus | 21.12 | 19.29 |
| CDY57240 | Canola | nucleus | 19.83 | 19.25 |
| CDX71975 | Canola | nucleus | 20.69 | 19.05 |
| CDY06054 | Canola | nucleus | 20.69 | 18.97 |
| CDY56241 | Canola | nucleus | 18.1 | 18.75 |
| CDY64571 | Canola | nucleus | 20.69 | 15.24 |
Protein Annotations
| EnsemblPlants:CDX81505 | EnsemblPlantsGene:GSBRNA2T00135143001 | Gene3D:3.30.160.60 | GO:A0A078CXE1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF237 |
| PFscan:PS50157 | ProteinID:CDX81505 | ProteinID:CDX81505.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 |
| UniParc:UPI0004EDC9B8 | MapMan:15.5.15 | : | : | : | : |
Description
BnaC02g18090D
Coordinates
chrLK031825:-:521182..521880
Molecular Weight (calculated)
24833.8 Da
IEP (calculated)
8.636
GRAVY (calculated)
-0.667
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIDFRSKT STSRLKLFGF SVDGEEDLFD QSVRTNQSSV STEPSEFPVG SSGGSGSGVR SRGGGGGERK YECQYCCREF GNSQALGGHQ NAHKKERQQL
101: KRAQLQATRN AAANYSNAGS ASPYLRNPIV SAFAPQPHHL SSAMTPPGGG GPWMYLPRVS PSHLHVPHGC VIQDGAGGFS YDSGFRFNGS QMRHVQTHGP
201: RPSVKGFSRE VGPTFDDGLG LDLHLSLAPA GH
101: KRAQLQATRN AAANYSNAGS ASPYLRNPIV SAFAPQPHHL SSAMTPPGGG GPWMYLPRVS PSHLHVPHGC VIQDGAGGFS YDSGFRFNGS QMRHVQTHGP
201: RPSVKGFSRE VGPTFDDGLG LDLHLSLAPA GH
001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
Arabidopsis Description
GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.