Factsheet for VIT_01s0011g03780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009180.1.1	Tomato	nucleus	70.14	72.09
PGSC0003DMT400037720	Potato	nucleus	70.14	72.09
Solyc05g009170.1.1	Tomato	nucleus	66.06	68.87
PGSC0003DMT400037771	Potato	nucleus	64.25	66.98
KRG90856	Soybean	nucleus	68.78	54.09
KRH35924	Soybean	nucleus	68.78	53.71
VIT_14s0006g02730.t01	Wine grape	cytosol, mitochondrion, nucleus	48.87	51.43
CDX96028	Canola	nucleus	54.75	51.27
Bra004300.1-P	Field mustard	nucleus	53.85	50.42
CDY01910	Canola	nucleus	54.3	50.42
AT1G68360.1	Thale cress	nucleus	55.66	50.41
CDX81505	Canola	nucleus	52.04	49.57
CDY67985	Canola	nucleus	52.49	49.36
Bra033944.1-P	Field mustard	nucleus	50.23	47.84
VIT_05s0077g01390.t01	Wine grape	nucleus	27.15	28.99
VIT_01s0026g00850.t01	Wine grape	nucleus	26.7	23.89
VIT_08s0007g06870.t01	Wine grape	nucleus	24.43	22.69
VIT_14s0066g01860.t01	Wine grape	nucleus	20.81	19.17

Protein Annotations

EntrezGene:100245810	wikigene:100245810	MapMan:15.5.15	Gene3D:3.30.160.60	UniProt:A5BMV3	EMBL:AM465028
ProteinID:CAN72502	ProteinID:CAN72502.1	ProteinID:CCB50897	ProteinID:CCB50897.1	EMBL:FN595752	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR013087	EntrezGene:LOC100245810	wikigene:LOC100245810	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF237	SUPFAM:SSF57667	TIGR:TC70297	UniParc:UPI000152152C	ArrayExpress:VIT_01s0011g03780	EnsemblPlantsGene:VIT_01s0011g03780
EnsemblPlants:VIT_01s0011g03780.t01	unigene:Vvi.17305	RefSeq:XP_002283623	RefSeq:XP_002283623.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3422552..3423445

Molecular Weight (calculated)

23140.9 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.449

Length

221 amino acids

Sequence
(BLAST)

001: MAEIDYQAKA TSAPTNGRLK IFGFNVSEDE DVESSKTPSG SPESGGFPAT GDRKYECQYC CREFANSQAL GGHQNAHKKE RQQLKRAQMQ ATRNAATSYI
101: RNPMISAFAP PPHLLAPAGP VVVPAGAAPQ SASWVYVPRG PPPFHVSHGC VFPSSSGRGA ATLSYAGGVG ESTLTTSAPQ SRAHGRVDAP SLSRFSRGDG
201: GPTFDDAFGL DLHLSLAPAA P

Best Arabidopsis Sequence Match ( AT1G68360.1 )
(BLAST)

001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH

Arabidopsis Description

GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.