Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20629 | Canola | nucleus | 34.01 | 40.78 |
| CDY67406 | Canola | nucleus | 34.01 | 40.78 |
| Bra031715.1-P | Field mustard | nucleus | 33.6 | 40.69 |
| CDY34889 | Canola | nucleus | 33.2 | 40.59 |
| Bra018438.1-P | Field mustard | nucleus | 33.2 | 40.0 |
| CDY20951 | Canola | nucleus | 33.2 | 40.0 |
| AT1G10480.1 | Thale cress | nucleus | 33.6 | 39.34 |
| VIT_14s0066g01860.t01 | Wine grape | nucleus | 37.25 | 38.33 |
| VIT_01s0011g03780.t01 | Wine grape | nucleus | 23.89 | 26.7 |
| VIT_14s0006g02730.t01 | Wine grape | cytosol, mitochondrion, nucleus | 22.67 | 26.67 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 23.08 | 23.95 |
| VIT_05s0077g01390.t01 | Wine grape | nucleus | 19.03 | 22.71 |
Protein Annotations
| EntrezGene:100854597 | wikigene:100854597 | MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:CBI32082 | ProteinID:CBI32082.3 |
| UniProt:D7TNK9 | EMBL:FN596002 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | EntrezGene:LOC100854597 | wikigene:LOC100854597 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF252 | SUPFAM:SSF57667 | TIGR:TC69822 |
| UniParc:UPI0001BE3D22 | ArrayExpress:VIT_01s0026g00850 | EnsemblPlantsGene:VIT_01s0026g00850 | EnsemblPlants:VIT_01s0026g00850.t01 | unigene:Vvi.8392 | RefSeq:XP_003631292 |
| RefSeq:XP_003631292.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : |
Description
No Description!
Coordinates
chr1:-:9724613..9725478
Molecular Weight (calculated)
27642.2 Da
IEP (calculated)
7.861
GRAVY (calculated)
-0.923
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDGSSLLS PISDGEHGDS AGTSVEKKLR LFGFELDPYK KGESCLKESV ERDESVNSSN TDSSGREKPS IEKNSTVEPE DKKFECQYCF KEFANSQALG
101: GHQNAHKKER MKKKRLQLQA RKASINHYLQ PLQNNHSFTY HGSALWFYDP SCQSPDDESQ ISFTPFDQDA HLKKSQFSKW YAPPANLPLQ QDTCMFTLTH
201: PDGSGQNKPA IIKPSPLPVS KQNCKSLDLQ LGLSVQPNIR SSSRSGI
101: GHQNAHKKER MKKKRLQLQA RKASINHYLQ PLQNNHSFTY HGSALWFYDP SCQSPDDESQ ISFTPFDQDA HLKKSQFSKW YAPPANLPLQ QDTCMFTLTH
201: PDGSGQNKPA IIKPSPLPVS KQNCKSLDLQ LGLSVQPNIR SSSRSGI
001: MSINPTMSRT GESSSGSSSD KTIKLFGFEL ISGSRTPEIT TAESVSSSTN TTSLTVMKRH ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
Arabidopsis Description
ZFP5Zinc finger protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q39264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.