Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0011g03780.t01 | Wine grape | nucleus | 51.43 | 48.87 |
| PGSC0003DMT400037720 | Potato | nucleus | 48.1 | 46.98 |
| Solyc05g009180.1.1 | Tomato | nucleus | 47.62 | 46.51 |
| AT1G67030.1 | Thale cress | nucleus | 42.86 | 45.69 |
| PGSC0003DMT400037771 | Potato | nucleus | 44.29 | 43.87 |
| Solyc05g009170.1.1 | Tomato | nucleus | 44.29 | 43.87 |
| Bra004200.1-P | Field mustard | nucleus | 39.05 | 42.93 |
| CDX96114 | Canola | nucleus | 39.05 | 42.93 |
| CDY01779 | Canola | nucleus | 40.0 | 42.86 |
| VIT_05s0077g01390.t01 | Wine grape | nucleus | 28.57 | 28.99 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 28.1 | 24.79 |
| VIT_01s0026g00850.t01 | Wine grape | nucleus | 26.67 | 22.67 |
| VIT_14s0066g01860.t01 | Wine grape | nucleus | 22.86 | 20.0 |
Protein Annotations
| EntrezGene:100254923 | wikigene:100254923 | MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:CBI33637 | ProteinID:CBI33637.3 |
| UniProt:D7TT15 | EMBL:FN596245 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009736 |
| GO:GO:0009740 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0010026 | GO:GO:0022626 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR013087 | EntrezGene:LOC100254923 | wikigene:LOC100254923 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF237 | SUPFAM:SSF57667 | UniParc:UPI0001BE3BED | ArrayExpress:VIT_14s0006g02730 |
| EnsemblPlantsGene:VIT_14s0006g02730 | EnsemblPlants:VIT_14s0006g02730.t01 | RefSeq:XP_002280652 | RefSeq:XP_002280652.2 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:20758254..20758931
Molecular Weight (calculated)
23155.5 Da
IEP (calculated)
8.726
GRAVY (calculated)
-0.592
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MADIHCQTKP NNATMGLKLF GFNISEVEEL ESGKSPSSPE SEIFQADGRR YECQYCCREF ANSQALGGHQ NAHKKERQQL KRAKLQASAR SFPDSFIRNP
101: MVSAFMPPPH LFAPPSAPPQ SFPWAYMPRA GAAPSFRAPQ RGFMIKCGSE AAPEAYAGYE RETPVRATLY REVQAHAGVV PELLRRGDDG PRLEKGLGLD
201: LHLSLGPAKP
101: MVSAFMPPPH LFAPPSAPPQ SFPWAYMPRA GAAPSFRAPQ RGFMIKCGSE AAPEAYAGYE RETPVRATLY REVQAHAGVV PELLRRGDDG PRLEKGLGLD
201: LHLSLGPAKP
001: MEELDFSSKT TTSRLKLFGF SVDGEEDFSD QSVKTNLSSV SPERGEFPAG SSGRSGGGVR SRGGGGGGGE RKYECQYCCR EFGNSQALGG HQNAHKKERQ
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
101: QLKRAQLQAT RNAAANFSNA GSASQFLRNP IVSAFAPPPH LLSSSAVPQP MGGPWMYLPR VSPSQLHVSH GCVIQDGSGG AGAGGFSYEY GARDSGFGVV
201: GAQMRHVQAH GPRPSVNGFS REVGTTFDDG LGLDLHLSLA PAGH
Arabidopsis Description
GIS3Zinc finger protein GIS3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9H1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.