Factsheet for Bra004200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96114	Canola	nucleus	100.0	100.0
CDY01779	Canola	nucleus	92.67	90.31
AT1G67030.1	Thale cress	nucleus	79.58	77.16
VIT_14s0006g02730.t01	Wine grape	cytosol, mitochondrion, nucleus	42.93	39.05
Solyc05g009170.1.1	Tomato	nucleus	40.84	36.79
PGSC0003DMT400037771	Potato	nucleus	40.84	36.79
Solyc05g009180.1.1	Tomato	nucleus	39.27	34.88
PGSC0003DMT400037720	Potato	nucleus	39.27	34.88
Bra004300.1-P	Field mustard	nucleus	37.7	30.51
Bra033944.1-P	Field mustard	nucleus	36.13	29.74
Bra031715.1-P	Field mustard	nucleus	22.51	21.08
Bra018438.1-P	Field mustard	nucleus	21.47	20.0
Bra028724.1-P	Field mustard	nucleus	18.32	19.23
Bra003317.1-P	Field mustard	nucleus	22.51	18.22
Bra000245.1-P	Field mustard	nucleus	23.56	18.15
Bra016900.1-P	Field mustard	nucleus	23.04	17.32
Bra004660.1-P	Field mustard	nucleus	22.51	17.2
Bra007378.1-P	Field mustard	nucleus	21.47	16.21

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra004200	EnsemblPlants:Bra004200.1	EnsemblPlants:Bra004200.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009736	GO:GO:0009740	GO:GO:0009788	GO:GO:0009987	GO:GO:0010026
GO:GO:0022626	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:IPR013087	UniProt:M4CJ16
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF243	SUPFAM:SSF57667	UniParc:UPI0002541579
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

AT1G67030 (E=3e-059) ZFP6 | ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA07:+:17383777..17384352

Molecular Weight (calculated)

21263.2 Da

IEP (calculated)

7.717

GRAVY (calculated)

-0.761

Length

191 amino acids

Sequence
(BLAST)

001: MATDTSSLKL FGINLLETTS DPDQSPEPRS EPEPESRKYE CQYCCREFAN SQALGGHQNA HKKERQLLKR AQMLAARGLP RHNNYHPHMN PLLSAFSPPH
101: MMLSPSSSTS KWLYGEHMHV SSQKAAGPMY FYGGSERRGF YGGGMETMAG EVRAHGGSLP EMRRFTGEND RITEVKLDNG IGLDLHLSLG P

Best Arabidopsis Sequence Match ( AT1G67030.1 )
(BLAST)

001: MATETSSLKL FGINLLETTS VQNQSSEPRP GSGSGSESRK YECQYCCREF ANSQALGGHQ NAHKKERQLL KRAQMLATRG LPRHHNFHPH TNPLLSAFAP
101: LPHLLSQPHP PPHMMLSPSS SSSKWLYGEH MSSQNAVGYF HGGRGLYGGG MESMAGEVKT HGGSLPEMRR FAGDSDRSSG IKLENGIGLD LHLSLGP

Arabidopsis Description

ZFP6Zinc finger protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q39265]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.