Factsheet for Bra003317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56241	Canola	nucleus	88.14	92.86
Bra007378.1-P	Field mustard	nucleus	75.85	70.75
AT3G58070.1	Thale cress	nucleus	64.41	60.08
Bra016900.1-P	Field mustard	nucleus	48.31	44.88
Bra004660.1-P	Field mustard	nucleus	47.03	44.4
Bra000245.1-P	Field mustard	nucleus	46.61	44.35
HORVU7Hr1G034930.2	Barley	nucleus	19.49	42.2
VIT_08s0007g06870.t01	Wine grape	nucleus	42.37	42.02
PGSC0003DMT400013992	Potato	nucleus	39.83	40.69
KRH67106	Soybean	nucleus	40.68	37.07
KRG95435	Soybean	nucleus	39.83	36.86
Solyc03g058160.2.1	Tomato	nucleus	33.9	36.36
Bra028724.1-P	Field mustard	nucleus	27.54	35.71
GSMUA_Achr10P...	Banana	nucleus	38.14	33.09
Os02t0775600-01	Rice	nucleus	37.71	31.9
Zm00001d018247_P001	Maize	nucleus	37.71	31.34
TraesCS7D01G167600.1	Wheat	nucleus	31.36	30.83
TraesCS7A01G167000.1	Wheat	nucleus	31.36	30.71
TraesCS7B01G071600.1	Wheat	nucleus	30.93	30.42
KRH38054	Soybean	nucleus	39.41	30.29
OQU80598	Sorghum	mitochondrion, nucleus, plastid	22.03	30.06
Zm00001d044980_P001	Maize	nucleus	31.36	29.84
Zm00001d037136_P001	Maize	nucleus	33.47	29.7
TraesCS6D01G314600.1	Wheat	nucleus	35.59	29.47
TraesCS6A01G335100.1	Wheat	nucleus	35.17	29.43
Zm00001d052118_P001	Maize	nucleus	37.71	29.09
EES07621	Sorghum	nucleus	37.71	28.9
HORVU6Hr1G080870.1	Barley	nucleus	34.75	28.87
TraesCS6B01G365700.1	Wheat	nucleus	34.75	28.67
OQU76029	Sorghum	plastid	34.32	27.65
GSMUA_Achr3P02080_001	Banana	nucleus	31.78	27.17
Bra004200.1-P	Field mustard	nucleus	18.22	22.51
HORVU7Hr1G034940.1	Barley	plastid	11.86	22.4
Bra004300.1-P	Field mustard	nucleus	20.34	20.34
Bra031715.1-P	Field mustard	nucleus	16.1	18.63
Bra018438.1-P	Field mustard	nucleus	16.1	18.54
Bra033944.1-P	Field mustard	nucleus	17.8	18.1

Protein Annotations

EnsemblPlants:Bra003317.1	EnsemblPlants:Bra003317.1-P	EnsemblPlantsGene:Bra003317	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SUPFAM:SSF57667	UniParc:UPI0002541628	UniProt:M4CGI4
MapMan:15.5.15	:	:	:	:	:

Description

AT3G58070 (E=3e-072) GIS | GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding

Coordinates

chrA07:-:12573734..12574444

Molecular Weight (calculated)

26334.0 Da

IEP (calculated)

9.177

GRAVY (calculated)

-1.035

Length

236 amino acids

Sequence
(BLAST)

001: MNVESFSQLP FFRRPPSKDK SSKPIRLFGK YFTGGDYFGE DHSEINNKKD KEKEEDQTED DGKDNSINNN RRFECHYCFR NFPTSQALGG HQNAHKRERQ
101: LAKRNASSYF HHPDANLYGY HHYPSWSSGS LPAARFYGAG HTLGTSSSYG TRPNGSPFGL WRVPPSSSSV KGSYNTDAGF TSHHDSYNNS TSPFLVGSQP
201: HPPLHVGGSS AQNRMSSYGH GLSPSLKDNV SLDLHL

Best Arabidopsis Sequence Match ( AT3G58070.1 )
(BLAST)

001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL

Arabidopsis Description

GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.