Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003317.1-P | Field mustard | nucleus | 92.86 | 88.14 |
| CDY57240 | Canola | nucleus | 91.52 | 85.77 |
| CDX71975 | Canola | nucleus | 78.12 | 69.44 |
| CDY06054 | Canola | nucleus | 77.68 | 68.77 |
| AT3G58070.1 | Thale cress | nucleus | 66.52 | 58.89 |
| CDY35394 | Canola | nucleus | 47.32 | 42.74 |
| CDY06892 | Canola | nucleus | 48.21 | 42.52 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 20.54 | 42.2 |
| CDY14805 | Canola | nucleus | 47.77 | 41.8 |
| CDX79901 | Canola | nucleus | 46.43 | 41.6 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 44.2 | 41.6 |
| CDY22545 | Canola | nucleus | 46.43 | 41.43 |
| PGSC0003DMT400013992 | Potato | nucleus | 40.62 | 39.39 |
| KRG95435 | Soybean | nucleus | 41.96 | 36.86 |
| CDY04997 | Canola | nucleus | 29.02 | 36.31 |
| KRH67106 | Soybean | nucleus | 41.96 | 36.29 |
| CDY14074 | Canola | nucleus | 29.02 | 36.11 |
| Solyc03g058160.2.1 | Tomato | nucleus | 34.38 | 35.0 |
| CDY64571 | Canola | nucleus | 45.09 | 32.06 |
| GSMUA_Achr10P... | Banana | nucleus | 37.5 | 30.88 |
| KRH38054 | Soybean | nucleus | 41.52 | 30.29 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 22.77 | 29.48 |
| Zm00001d044980_P001 | Maize | nucleus | 31.7 | 28.63 |
| Zm00001d037136_P001 | Maize | nucleus | 33.93 | 28.57 |
| Os02t0775600-01 | Rice | nucleus | 35.27 | 28.32 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 29.91 | 27.92 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 29.91 | 27.92 |
| TraesCS7A01G167000.1 | Wheat | nucleus | 29.91 | 27.8 |
| Zm00001d018247_P001 | Maize | nucleus | 34.38 | 27.11 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 33.04 | 25.96 |
| OQU76029 | Sorghum | plastid | 33.93 | 25.94 |
| TraesCS6A01G335100.1 | Wheat | nucleus | 32.59 | 25.89 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 31.7 | 25.72 |
| HORVU6Hr1G080870.1 | Barley | nucleus | 32.14 | 25.35 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 32.14 | 25.17 |
| Zm00001d052118_P001 | Maize | nucleus | 34.38 | 25.16 |
| EES07621 | Sorghum | nucleus | 34.38 | 25.0 |
| CDX96114 | Canola | nucleus | 18.3 | 21.47 |
| CDY01779 | Canola | nucleus | 18.3 | 20.92 |
| CDY20629 | Canola | nucleus | 17.86 | 19.42 |
| CDX96028 | Canola | nucleus | 20.09 | 19.07 |
| CDY67406 | Canola | nucleus | 17.41 | 18.93 |
| CDY01910 | Canola | nucleus | 20.09 | 18.91 |
| CDY34889 | Canola | nucleus | 16.96 | 18.81 |
| CDY20951 | Canola | nucleus | 16.96 | 18.54 |
| CDX81505 | Canola | nucleus | 18.75 | 18.1 |
| CDY67985 | Canola | nucleus | 18.75 | 17.87 |
| HORVU7Hr1G034940.1 | Barley | plastid | 9.38 | 16.8 |
Protein Annotations
| MapMan:15.5.15 | GO:A0A078IWV9 | UniProt:A0A078IWV9 | EnsemblPlants:CDY56241 | ProteinID:CDY56241 | ProteinID:CDY56241.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00018005001 | InterPro:IPR013087 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF316 | SUPFAM:SSF57667 | UniParc:UPI0004EEFA39 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaA07g37940DBnaA07g37940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWV9]
Coordinates
chrLK033471:+:11338..12087
Molecular Weight (calculated)
25311.7 Da
IEP (calculated)
7.085
GRAVY (calculated)
-1.102
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDELDGERET KDFMNVESFS QLPFFRRPPS KDKSSKPIRL FGKYFTGGDY FGEDHSEINN KKDKEKEEDQ TEDDGKDNSI NNNRRFECHY CFRNFPTSQA
101: LGGHQNAHKR ERQLAKRNAS SYFHHPDANL YGYHHYPSWS SGSLPAARFY GAGHTLGTSS SYNTDAAFTS HHDSYNNSTS PFLVGSQPHP PLHVGGSSAQ
201: NRMSSYGHGL SPSLKDNVSL DLHL
101: LGGHQNAHKR ERQLAKRNAS SYFHHPDANL YGYHHYPSWS SGSLPAARFY GAGHTLGTSS SYNTDAAFTS HHDSYNNSTS PFLVGSQPHP PLHVGGSSAQ
201: NRMSSYGHGL SPSLKDNVSL DLHL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.