Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G167000.1 | Wheat | nucleus | 90.0 | 89.63 |
| TraesCS7D01G167600.1 | Wheat | nucleus | 89.17 | 89.17 |
| HORVU7Hr1G034940.1 | Barley | plastid | 45.42 | 87.2 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 35.0 | 77.06 |
| Zm00001d044980_P001 | Maize | nucleus | 49.17 | 47.58 |
| OQU80598 | Sorghum | mitochondrion, nucleus, plastid | 33.75 | 46.82 |
| Zm00001d037136_P001 | Maize | nucleus | 48.33 | 43.61 |
| OQU76029 | Sorghum | plastid | 50.0 | 40.96 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 47.5 | 39.86 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 35.42 | 35.71 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 30.0 | 32.73 |
| PGSC0003DMT400013992 | Potato | nucleus | 30.83 | 32.03 |
| TraesCS5B01G229800.1 | Wheat | nucleus | 40.0 | 31.58 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 33.33 | 31.5 |
| Bra003317.1-P | Field mustard | nucleus | 30.42 | 30.93 |
| CDY56241 | Canola | nucleus | 27.92 | 29.91 |
| KRG95435 | Soybean | nucleus | 31.67 | 29.8 |
| KRH67106 | Soybean | nucleus | 32.08 | 29.73 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 34.17 | 29.71 |
| TraesCS4B01G244900.1 | Wheat | nucleus | 34.58 | 29.64 |
| Solyc03g058160.2.1 | Tomato | nucleus | 27.08 | 29.55 |
| CDY57240 | Canola | nucleus | 29.17 | 29.29 |
| CDY35394 | Canola | nucleus | 30.0 | 29.03 |
| CDX79901 | Canola | nucleus | 30.0 | 28.8 |
| Bra000245.1-P | Field mustard | nucleus | 29.58 | 28.63 |
| CDY22545 | Canola | nucleus | 29.58 | 28.29 |
| Bra028724.1-P | Field mustard | nucleus | 21.25 | 28.02 |
| Bra004660.1-P | Field mustard | nucleus | 29.17 | 28.0 |
| Bra016900.1-P | Field mustard | nucleus | 29.58 | 27.95 |
| CDY06892 | Canola | nucleus | 29.58 | 27.95 |
| CDY14805 | Canola | nucleus | 29.58 | 27.73 |
| PGSC0003DMT400060839 | Potato | nucleus | 27.5 | 27.73 |
| GSMUA_Achr10P... | Banana | nucleus | 31.25 | 27.57 |
| CDY04997 | Canola | nucleus | 20.42 | 27.37 |
| Solyc10g080600.1.1 | Tomato | nucleus | 26.67 | 27.35 |
| Solyc10g078970.1.1 | Tomato | nucleus | 23.33 | 27.32 |
| AT2G41940.1 | Thale cress | nucleus | 29.17 | 27.24 |
| CDY14074 | Canola | nucleus | 20.42 | 27.22 |
| CDX71975 | Canola | nucleus | 28.33 | 26.98 |
| Bra007378.1-P | Field mustard | nucleus | 28.33 | 26.88 |
| CDY06054 | Canola | nucleus | 28.33 | 26.88 |
| AT3G58070.1 | Thale cress | nucleus | 27.5 | 26.09 |
| KRH38054 | Soybean | nucleus | 33.33 | 26.06 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 25.0 | 25.86 |
| AT5G06650.1 | Thale cress | nucleus | 20.42 | 25.65 |
| PGSC0003DMT400029797 | Potato | nucleus | 27.5 | 25.58 |
| TraesCS3B01G405300.1 | Wheat | nucleus | 19.58 | 23.98 |
| CDY64571 | Canola | nucleus | 27.92 | 21.27 |
| TraesCS3B01G048000.1 | Wheat | nucleus | 21.25 | 19.69 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G071600.1 | EnsemblPlantsGene:TraesCS7B01G071600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF247 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr7B:+:79051232..79051954
Molecular Weight (calculated)
24778.2 Da
IEP (calculated)
6.730
GRAVY (calculated)
-0.167
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPHGTVLG GADSFSQLPL VRVAAQQPAD STIRLFGCDF SNDAVAAGDQ LPKADAAAAA GEGETRKFEC HYCCRNFPTS QALGGHQNAH KRERQHARRA
101: HLEASLAAAY LPAGAHVYGA LFGGYDHHQA APMPPPQYPV WPGMYGSVAR SAAYGGMTVP GMVWRPTPVG ADAFGAAGRH DEATAAVAGT GEVPGKDGHN
201: AVMSVVATLP SCLTGGSPTE IGRSEMMGQK EGVVSLDLCL
101: HLEASLAAAY LPAGAHVYGA LFGGYDHHQA APMPPPQYPV WPGMYGSVAR SAAYGGMTVP GMVWRPTPVG ADAFGAAGRH DEATAAVAGT GEVPGKDGHN
201: AVMSVVATLP SCLTGGSPTE IGRSEMMGQK EGVVSLDLCL
001: MKTYDFMNVN SFSPKERPIR LFGFEFGASH EESESKDNYN ENNESIKDDN KEKRFKCHYC FRNFPTSQAL GGHQNAHKRE RQQTKRFNLH SNAAAFFHRQ
101: QNHIAASRLY EDRYSLEAVQ INDARLGLCR MYNSSASFNR DRSSYYNRYI PWFIGDHQTR PTYVGGGSSS HGLFYESKKN VPDHVSLDLR L
101: QNHIAASRLY EDRYSLEAVQ INDARLGLCR MYNSSASFNR DRSSYYNRYI PWFIGDHQTR PTYVGGGSSS HGLFYESKKN VPDHVSLDLR L
Arabidopsis Description
GIS2Zinc finger protein GIS2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG05]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.