Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G079300.1 | Wheat | nucleus | 96.07 | 95.39 |
| TraesCS4D01G244500.1 | Wheat | nucleus | 94.29 | 93.62 |
| Os03t0216000-01 | Rice | nucleus | 70.36 | 66.33 |
| EER92638 | Sorghum | nucleus | 70.0 | 65.99 |
| Zm00001d028222_P001 | Maize | nucleus | 69.64 | 61.13 |
| GSMUA_Achr1P22000_001 | Banana | nucleus | 34.29 | 36.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.07 | 35.78 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 35.36 | 34.62 |
| TraesCS7B01G071600.1 | Wheat | nucleus | 29.64 | 34.58 |
| TraesCS5B01G229800.1 | Wheat | nucleus | 36.79 | 33.88 |
| TraesCS3B01G405300.1 | Wheat | nucleus | 17.14 | 24.49 |
| TraesCS3B01G048000.1 | Wheat | nucleus | 17.86 | 19.3 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G244900.1 | EnsemblPlantsGene:TraesCS4B01G244900 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF226 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr4B:+:506909699..506910956
Molecular Weight (calculated)
28970.8 Da
IEP (calculated)
9.235
GRAVY (calculated)
-0.425
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGGRGG GGGGGAASVR EPHDFGNVAS FSELPFLRSG APPRESPNSG IRLFGIDVPH ASPEGRIKEA TAASSATPSA TTQSSSGAAI TAASAAPDSN
101: RKFECHYCCR HFPTSQALGG HQNAHKRERQ HAKRVQMQSA MAAAAAAAGS AHHYHLLGYP QHRFGATLYP SWTMVSGGVS YGQQFYRGIG SVGQPINRNP
201: LPEAQWRRPL AAHANMGMPL AGERQPVTLH MFGEEQRASP SLGAASTSSS SLLLSPQGQS ACEQPATTAA PEGVSLDLHL
101: RKFECHYCCR HFPTSQALGG HQNAHKRERQ HAKRVQMQSA MAAAAAAAGS AHHYHLLGYP QHRFGATLYP SWTMVSGGVS YGQQFYRGIG SVGQPINRNP
201: LPEAQWRRPL AAHANMGMPL AGERQPVTLH MFGEEQRASP SLGAASTSSS SLLLSPQGQS ACEQPATTAA PEGVSLDLHL
001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL
Arabidopsis Description
GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.