Factsheet for Solyc10g078990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029797	Potato	nucleus	87.07	78.29
Solyc10g078970.1.1	Tomato	nucleus	51.29	58.05
Solyc03g058160.2.1	Tomato	nucleus	37.5	39.55
HORVU7Hr1G034930.2	Barley	nucleus	17.24	36.7
Solyc10g080600.1.1	Tomato	nucleus	34.05	33.76
GSMUA_Achr10P...	Banana	nucleus	34.48	29.41
Zm00001d018247_P001	Maize	nucleus	34.48	28.17
Os02t0775600-01	Rice	nucleus	33.62	27.96
OQU80598	Sorghum	mitochondrion, nucleus, plastid	19.83	26.59
TraesCS7D01G167600.1	Wheat	nucleus	27.16	26.25
TraesCS6A01G335100.1	Wheat	nucleus	31.9	26.24
TraesCS6B01G365700.1	Wheat	nucleus	32.33	26.22
Solyc01g060420.2.1	Tomato	nucleus	17.24	25.97
TraesCS6D01G314600.1	Wheat	nucleus	31.9	25.96
Zm00001d052118_P001	Maize	nucleus	34.05	25.82
Zm00001d044980_P001	Maize	nucleus	27.59	25.81
TraesCS7A01G167000.1	Wheat	nucleus	26.72	25.73
GSMUA_Achr3P02080_001	Banana	nucleus	30.6	25.72
HORVU6Hr1G080870.1	Barley	nucleus	31.47	25.7
EES07621	Sorghum	nucleus	33.62	25.32
TraesCS7B01G071600.1	Wheat	nucleus	25.86	25.0
Zm00001d037136_P001	Maize	nucleus	27.16	23.68
OQU76029	Sorghum	plastid	28.88	22.87
Solyc05g009180.1.1	Tomato	nucleus	19.83	21.4
Solyc05g009170.1.1	Tomato	nucleus	18.53	20.28
Solyc05g006310.1.1	Tomato	nucleus	18.1	16.8
HORVU7Hr1G034940.1	Barley	plastid	9.05	16.8
Solyc03g113890.1.1	Tomato	nucleus	14.22	14.35

Protein Annotations

EnsemblPlants:Solyc10g078990.1.1	EnsemblPlantsGene:Solyc10g078990.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028
SUPFAM:SSF57667	UniParc:UPI000276A57A	UniProt:K4D2E0	MapMan:15.5.15	:	:

Description

No Description!

Coordinates

chr10:-:60635672..60636595

Molecular Weight (calculated)

26561.1 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.828

Length

232 amino acids

Sequence
(BLAST)

001: MEKIEREALD FMNVESSSQL PITLPVNEKP IRLFGKEFGG GDSINMTATN MSEFIENNPF YDKPNIVKEN HIKKNVEIMR KYECHYCFRS FPTSQALGGH
101: QNAHKKERKN AKRHDQPSIY GITNRNRLGE ATVSTRTHYH STWTNINNNT PRFDGNGHNV NVISPINGNP LTFWQIPPAF NQYISSSSDN NNNLVFSNDD
201: LIRNPPMVNI SNNCEYKPKG EVQDHVSLDL HL

Best Arabidopsis Sequence Match ( AT2G41940.1 )
(BLAST)

001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL

Arabidopsis Description

ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.