Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G335100.1 | Wheat | nucleus | 92.61 | 93.26 |
| TraesCS6B01G365700.1 | Wheat | nucleus | 93.31 | 92.66 |
| TraesCS6D01G314600.1 | Wheat | nucleus | 91.9 | 91.58 |
| Os02t0775600-01 | Rice | nucleus | 69.01 | 70.25 |
| Zm00001d018247_P001 | Maize | nucleus | 65.14 | 65.14 |
| EES07621 | Sorghum | nucleus | 69.72 | 64.29 |
| Zm00001d052118_P001 | Maize | nucleus | 66.2 | 61.44 |
| HORVU7Hr1G034930.2 | Barley | nucleus | 21.83 | 56.88 |
| VIT_08s0007g06870.t01 | Wine grape | nucleus | 36.97 | 44.12 |
| GSMUA_Achr8P22740_001 | Banana | nucleus | 36.97 | 41.34 |
| PGSC0003DMT400013992 | Potato | nucleus | 32.04 | 39.39 |
| Solyc03g058160.2.1 | Tomato | nucleus | 29.93 | 38.64 |
| GSMUA_Achr3P07800_001 | Banana | nucleus | 29.23 | 37.73 |
| KRG95435 | Soybean | nucleus | 33.8 | 37.65 |
| KRH67106 | Soybean | nucleus | 33.45 | 36.68 |
| HORVU5Hr1G066750.1 | Barley | nucleus | 38.03 | 36.0 |
| Solyc10g080600.1.1 | Tomato | nucleus | 29.23 | 35.47 |
| PGSC0003DMT400060839 | Potato | nucleus | 29.58 | 35.29 |
| CDX79901 | Canola | nucleus | 30.99 | 35.2 |
| Bra004660.1-P | Field mustard | nucleus | 30.99 | 35.2 |
| CDY57240 | Canola | nucleus | 29.58 | 35.15 |
| Bra003317.1-P | Field mustard | nucleus | 28.87 | 34.75 |
| CDY35394 | Canola | nucleus | 30.28 | 34.68 |
| CDY22545 | Canola | nucleus | 30.63 | 34.66 |
| GSMUA_Achr10P... | Banana | nucleus | 33.1 | 34.56 |
| HORVU7Hr1G034940.1 | Barley | plastid | 15.14 | 34.4 |
| Bra000245.1-P | Field mustard | nucleus | 29.93 | 34.27 |
| CDY06892 | Canola | nucleus | 30.63 | 34.25 |
| Bra016900.1-P | Field mustard | nucleus | 30.63 | 34.25 |
| GSMUA_Achr3P02080_001 | Banana | nucleus | 32.75 | 33.7 |
| Solyc10g078970.1.1 | Tomato | nucleus | 24.3 | 33.66 |
| CDY14805 | Canola | nucleus | 30.28 | 33.59 |
| AT2G41940.1 | Thale cress | nucleus | 29.93 | 33.07 |
| Bra028724.1-P | Field mustard | nucleus | 21.13 | 32.97 |
| KRH38054 | Soybean | nucleus | 35.56 | 32.9 |
| AT3G58070.1 | Thale cress | nucleus | 29.23 | 32.81 |
| CDY14074 | Canola | nucleus | 20.77 | 32.78 |
| CDX71975 | Canola | nucleus | 28.87 | 32.54 |
| CDY04997 | Canola | nucleus | 20.42 | 32.4 |
| CDY56241 | Canola | nucleus | 25.35 | 32.14 |
| AT5G06650.1 | Thale cress | nucleus | 21.48 | 31.94 |
| PGSC0003DMT400029797 | Potato | nucleus | 28.87 | 31.78 |
| CDY06054 | Canola | nucleus | 28.17 | 31.62 |
| Bra007378.1-P | Field mustard | nucleus | 28.17 | 31.62 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 25.7 | 31.47 |
| CDY64571 | Canola | nucleus | 30.28 | 27.3 |
| HORVU3Hr1G007060.1 | Barley | nucleus | 20.42 | 22.39 |
Protein Annotations
| EMBL:AK358069 | EnsemblPlants:HORVU6Hr1G080870.1 | EnsemblPlantsGene:HORVU6Hr1G080870 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF238 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0002005468 | UniProt:F2D2G2 | MapMan:15.5.15 |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D2G2]
Coordinates
chrchr6H:+:543368898..543370637
Molecular Weight (calculated)
30232.4 Da
IEP (calculated)
8.738
GRAVY (calculated)
-0.617
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPQEVRRV DSFSQLPFIR PAAAAQQQQQ QQGRDTIRLF GREFSNNDPL QQQQRKQEAG AGSPDAANGS TVTSEGNGGG GGAKGGAAAA GETRKFECHY
101: CCRNFPTSQA LGGHQNAHKR ERQHAKRAHL QASLAMHRYV PGGHHMYGAL LNYHHHHHPA AARYDHPPPH YPMWTTAGMG PYAGGPGSVS QPIDGSPVAQ
201: GHWRVPLPAV ESFGAAVRHG HGAADMAPAV VVQPGAVMTS KDEKVVMSLL SSSPSLSSCS STSPEKLGRC ELGQQEALSL DLHL
101: CCRNFPTSQA LGGHQNAHKR ERQHAKRAHL QASLAMHRYV PGGHHMYGAL LNYHHHHHPA AARYDHPPPH YPMWTTAGMG PYAGGPGSVS QPIDGSPVAQ
201: GHWRVPLPAV ESFGAAVRHG HGAADMAPAV VVQPGAVMTS KDEKVVMSLL SSSPSLSSCS STSPEKLGRC ELGQQEALSL DLHL
001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL
Arabidopsis Description
ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.