Factsheet for Solyc10g080600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060839	Potato	nucleus	92.73	91.18
Solyc03g058160.2.1	Tomato	nucleus	38.89	41.36
HORVU7Hr1G034930.2	Barley	nucleus	19.23	41.28
Solyc10g078990.1.1	Tomato	cytoskeleton, cytosol, nucleus	33.76	34.05
Solyc10g078970.1.1	Tomato	nucleus	27.78	31.71
Zm00001d018247_P001	Maize	nucleus	37.18	30.63
GSMUA_Achr10P...	Banana	nucleus	35.04	30.15
Os02t0775600-01	Rice	nucleus	35.04	29.39
HORVU6Hr1G080870.1	Barley	nucleus	35.47	29.23
TraesCS6B01G365700.1	Wheat	nucleus	35.47	29.02
TraesCS6D01G314600.1	Wheat	nucleus	34.62	28.42
TraesCS6A01G335100.1	Wheat	nucleus	34.19	28.37
GSMUA_Achr3P02080_001	Banana	nucleus	33.33	28.26
Zm00001d044980_P001	Maize	nucleus	29.91	28.23
EES07621	Sorghum	nucleus	35.9	27.27
OQU80598	Sorghum	mitochondrion, nucleus, plastid	20.09	27.17
Zm00001d052118_P001	Maize	nucleus	35.47	27.12
TraesCS7B01G071600.1	Wheat	nucleus	27.35	26.67
TraesCS7D01G167600.1	Wheat	nucleus	26.92	26.25
Zm00001d037136_P001	Maize	nucleus	29.49	25.94
TraesCS7A01G167000.1	Wheat	nucleus	26.5	25.73
Solyc05g009180.1.1	Tomato	nucleus	22.22	24.19
OQU76029	Sorghum	plastid	29.49	23.55
Solyc05g009170.1.1	Tomato	nucleus	20.94	23.11
Solyc01g060420.2.1	Tomato	nucleus	14.96	22.73
Solyc05g006310.1.1	Tomato	nucleus	18.8	17.6
HORVU7Hr1G034940.1	Barley	plastid	7.26	13.6
Solyc03g113890.1.1	Tomato	nucleus	11.54	11.74

Protein Annotations

EnsemblPlants:Solyc10g080600.1.1	EnsemblPlantsGene:Solyc10g080600.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF57667	UniParc:UPI00027694BA	UniProt:K4D2V0	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr10:-:61817105..61817809

Molecular Weight (calculated)

26821.0 Da

IEP (calculated)

9.207

GRAVY (calculated)

-0.920

Length

234 amino acids

Sequence
(BLAST)

001: MEKTKDKETQ DFMNVESFSQ LPFMRPTKEK AAIRLFGKEL LGTTIRHEDQ SIEIHDSVGD TTEINNNNRK FECQYCCRNF PTSQALGGHQ NAHKRERQHA
101: KRAQYAKYQY NAYFNSALYN TSSTSSTTSG GLYVNNNGHS HYYSQQINRD INENHRSLSA LWRVPHVHHS SISSSSNSYS PNNVSNFVRP IVYNNVNGDL
201: KKINTKSSSI SLTRFGYELK EGVHQDHVSL DLHL

Best Arabidopsis Sequence Match ( AT3G58070.1 )
(BLAST)

001: MDEATGETET QDFMNVESFS QLPFIRRPKD KNPKPIRVFG KDFTGRDFSI TTGQEDYTDP YQTKNKEEEE EEDQTGDNST DNNSISHNRR FECHYCFRNF
101: PTSQALGGHQ NAHKRERQLA KRGVSSYFYH PDNNPYSYRH YPSWTNGPLT AARSYGGFSS GPKPSGYYTR PSYGSQLGLW RLPPRVQGVY NSNAAFTSNG
201: SSSSSNSTLP LLTRSQTQLS SQVGGSAAQN RMSSYGYGLS PNVQDHVSLD LHL

Arabidopsis Description

GISGIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.