Factsheet for Solyc10g078970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078990.1.1	Tomato	cytoskeleton, cytosol, nucleus	58.05	51.29
HORVU7Hr1G034930.2	Barley	nucleus	19.02	35.78
Solyc03g058160.2.1	Tomato	nucleus	35.61	33.18
Solyc10g080600.1.1	Tomato	nucleus	31.71	27.78
Os02t0775600-01	Rice	nucleus	36.1	26.52
Zm00001d018247_P001	Maize	nucleus	36.1	26.06
GSMUA_Achr10P...	Banana	nucleus	34.15	25.74
OQU80598	Sorghum	mitochondrion, nucleus, plastid	21.46	25.43
Zm00001d044980_P001	Maize	nucleus	30.24	25.0
HORVU6Hr1G080870.1	Barley	nucleus	33.66	24.3
TraesCS6D01G314600.1	Wheat	nucleus	33.66	24.21
TraesCS7D01G167600.1	Wheat	nucleus	28.29	24.17
TraesCS6B01G365700.1	Wheat	nucleus	33.66	24.13
Zm00001d052118_P001	Maize	nucleus	35.61	23.86
TraesCS7A01G167000.1	Wheat	nucleus	27.8	23.65
GSMUA_Achr3P02080_001	Banana	nucleus	31.71	23.55
TraesCS6A01G335100.1	Wheat	nucleus	32.2	23.4
EES07621	Sorghum	nucleus	35.12	23.38
TraesCS7B01G071600.1	Wheat	nucleus	27.32	23.33
Solyc05g009180.1.1	Tomato	nucleus	23.41	22.33
Zm00001d037136_P001	Maize	nucleus	28.78	22.18
OQU76029	Sorghum	plastid	31.22	21.84
Solyc05g009170.1.1	Tomato	nucleus	21.95	21.23
Solyc01g060420.2.1	Tomato	nucleus	15.61	20.78
Solyc05g006310.1.1	Tomato	nucleus	19.51	16.0
Solyc03g113890.1.1	Tomato	nucleus	17.07	15.22
HORVU7Hr1G034940.1	Barley	plastid	8.29	13.6

Protein Annotations

EnsemblPlants:Solyc10g078970.1.1	EnsemblPlantsGene:Solyc10g078970.1	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF316	PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028
SEG:seg	SUPFAM:SSF57667	UniParc:UPI000276A578	UniProt:K4D2D8	MapMan:15.5.15	:

Description

No Description!

Coordinates

chr10:-:60609617..60610602

Molecular Weight (calculated)

23777.5 Da

IEP (calculated)

8.662

GRAVY (calculated)

-1.050

Length

205 amino acids

Sequence
(BLAST)

001: MEKIGREAVD YMNMKSFSQP LRKKSIRLFG KEFSVGDSTN MSESTDKNPL HHEPKPNTMS ISANRIDKTG HVDEISRKYE CYYCFRSFPT SQALGGHQNA
101: HKKERQNAKL SHLQSSIVHE TNRNRFGEPS TAATRLTHYH STWSNINNNN VYSPNYNEAF WQIPPTIHHY QNNINPPSSF SHDSFFPNDE EKREVQNHVS
201: LDLHL

Best Arabidopsis Sequence Match ( AT2G41940.1 )
(BLAST)

001: MDETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SDNLSAEPSD HQTTTKNDES SENIKDKDKE KDKDKDKDNN NNRRFECHYC
101: FRNFPTSQAL GGHQNAHKRE RQHAKRGSMT SYLHHHQPHD PHHIYGFLNN HHHRHYPSWT TEARSYYGGG GHQTPSYYSR NTLAPPSSNP PTINGSPLGL
201: WRVPPSTSTN TIQGVYSSSP ASAFRSHEQE TNKEPNNWPY RLMKPNVQDH VSLDLHL

Arabidopsis Description

ZFP8Zinc finger protein 8 [Source:UniProtKB/Swiss-Prot;Acc:P93751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.