Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400062866 | Potato | nucleus | 90.43 | 90.43 |
| VIT_14s0066g01860.t01 | Wine grape | nucleus | 32.61 | 31.25 |
| Solyc05g006310.1.1 | Tomato | nucleus | 28.26 | 26.0 |
| KRH74690 | Soybean | nucleus | 26.52 | 25.31 |
| KRH69467 | Soybean | nucleus | 26.09 | 24.39 |
| Solyc05g009170.1.1 | Tomato | nucleus | 19.13 | 20.75 |
| Solyc05g009180.1.1 | Tomato | nucleus | 19.13 | 20.47 |
| Solyc01g060420.2.1 | Tomato | nucleus | 13.48 | 20.13 |
| Solyc10g078970.1.1 | Tomato | nucleus | 15.22 | 17.07 |
| Solyc03g058160.2.1 | Tomato | nucleus | 14.78 | 15.45 |
| Solyc10g078990.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 14.35 | 14.22 |
| Solyc10g080600.1.1 | Tomato | nucleus | 11.74 | 11.54 |
Protein Annotations
| EnsemblPlants:Solyc03g113890.1.1 | EnsemblPlantsGene:Solyc03g113890.1 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF252 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg |
| SUPFAM:SSF57667 | UniParc:UPI0002767FDA | UniProt:K4BKP1 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3:+:63935776..63936468
Molecular Weight (calculated)
25700.3 Da
IEP (calculated)
8.477
GRAVY (calculated)
-0.495
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEALYQKST NLNLLSTGLN GTDNVCCKTT TSDKKLRIFG FEVSPCSNDI ISSKSESGES ISSSETFEDE RLVEKTSISM SSSSIVLPNP NENLRNLSSS
101: VFSKFKYECR FCLKKFANSR ALGGHQNAHR KERLKKKRMD LEAKRASSML HFFSLIRNGG VIYPYYSLSH QNLFVSGSST INFSSVYHCQ NGTHPLYVVV
201: DAHPQGELQL QNNCSTLLQG GESRERDLLS
101: VFSKFKYECR FCLKKFANSR ALGGHQNAHR KERLKKKRMD LEAKRASSML HFFSLIRNGG VIYPYYSLSH QNLFVSGSST INFSSVYHCQ NGTHPLYVVV
201: DAHPQGELQL QNNCSTLLQG GESRERDLLS
001: MSINPTMSRT GESSSGSSSD KTIKLFGFEL ISGSRTPEIT TAESVSSSTN TTSLTVMKRH ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
101: IGYYLTNHQQ PITTSFQRQY KTPSYCAFSS MHVNNDQMGV YNEDWSSRSS QINFGNNDTC QDLNEQSGEM GKLYGVRPNM IQFQRDLSSR SDQMRSINSL
201: DLHLGFAGDA A
Arabidopsis Description
ZFP5Zinc finger protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q39264]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.